Pairwise Alignments

Query, 1116 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

Subject, 1025 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Pseudomonas fluorescens FW300-N1B4

 Score =  846 bits (2186), Expect = 0.0
 Identities = 482/1067 (45%), Positives = 655/1067 (61%), Gaps = 48/1067 (4%)

Query: 1    MSADAVFCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKV 60
            MS D  + EL   +NFSF  GA+ A E+   AKK G   L I D  ++AG+VRA   AK 
Sbjct: 1    MSVD--YAELHCLSNFSFQRGASTALELFQRAKKQGYRALAITDECTLAGIVRAWQAAKA 58

Query: 61   EGYPFQPGARLVFADGTPDILAYPKNRRGWGHLCRLLSAGNLRSKKGDCTLHLADLLEWQ 120
               P   G+ +   DG P ++   ++  G+  LCRL++    R++KG   +   D  E  
Sbjct: 59   VELPLIIGSEVRIEDG-PKLVLLVESLEGYQTLCRLITRARRRTQKGQYQVLREDFGEPL 117

Query: 121  EELLLIVMQGEGRPEPESLE-VLLGT-LKEHAGNRLYLGLAPHYDGFDRHDFAVLAAIAR 178
              LL + +       P++++ V  G  LK+    RL+L +  H    D    A L  +AR
Sbjct: 118  PGLLALWV-------PDAVDDVEQGHWLKQTFAERLWLSVQLHRGQDDIRRLAALLTLAR 170

Query: 179  KAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQKNAERHLKGPREMARLF 238
            +  I  +A+ D   H    R L D +T+IR H+P+A AG  L  N ERHL   R +  L 
Sbjct: 171  ELRIPAVASGDVHMHARGRRALQDTMTAIRHHLPVAEAGLRLHPNGERHL---RSLDALR 227

Query: 239  SDYPEAIAN-TRKFFRELAFSLDELSHQYPDENA-DGETPAESLRRLVAEGAAERYPEGV 296
              YP+A+ + T    R   F L +L +QYP E   +G T    LR L  +G   R+ +G 
Sbjct: 228  DLYPQALLDETLNIARRCTFDLGQLRYQYPRELVPEGRTATSWLRELAEKGVRWRWEKGP 287

Query: 297  PEKVMRQIDYELELIHDKKYEPYFLTVHKLVKFARSVNILCQGRGSAANSSVCFCLGITD 356
              +V+ QID EL+LI +  YE YFLTVH +V FAR  +ILCQGRGSAANS+VC+ LGIT+
Sbjct: 288  KAEVLAQIDKELQLIAELGYESYFLTVHDIVNFARKQHILCQGRGSAANSAVCYVLGITE 347

Query: 357  VDPQKFTLLFDRFLSKDRDEPPDIDVDFEHERREEVIQYIYRTYGKEHAGLTAAVISYRS 416
            +DP++ TLLF+RFLSK+R+EPPDIDVDFEHERREEV+QY+++ YG+  A LTA V +Y  
Sbjct: 348  IDPERSTLLFERFLSKERNEPPDIDVDFEHERREEVLQYVFQRYGRARAALTAVVSTYHG 407

Query: 417  RSAGREVAKAFGLSEDVQSALVSSIWGWGTSPFTEEQAKGAGLDAADPLTRRVLAYASLL 476
              A R+VAKA GL  D  +AL      W       E+ +  G D   P+ RRVL+    L
Sbjct: 408  AGAVRDVAKALGLPPDQVNALADCCGHWSDQAPPVERLREGGFDPDSPVLRRVLSLTGQL 467

Query: 477  MNFPRHLSQHVGGFVITRDRLDEVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGM 536
            + FPRHLSQH GGFVI+   LD +VP+ N AM +R +I+WDKDDLD + +LKVD+LALGM
Sbjct: 468  IGFPRHLSQHPGGFVISEQPLDSLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGM 527

Query: 537  LTCLAKGFKLLEAHYGEPITLAEIYQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQ 596
            L+ + + F LL  H G  ++LA +  +     Y+MI  ADT+GVFQIESRAQMSMLPRL+
Sbjct: 528  LSAIRRCFDLLRRHRGRDLSLATVPAED-PQTYEMIGHADTIGVFQIESRAQMSMLPRLK 586

Query: 597  PREMYDLVIEVAIVRPGPIQGNMVHPYLKRREAQRRGEAVVYPSPELKAVLERTLGVPLF 656
            P+  YDLVIEVAIVRPGPIQG MVHPYL+RR+ +   E V+YPS EL+ VL+RTLGVPLF
Sbjct: 587  PKNFYDLVIEVAIVRPGPIQGGMVHPYLRRRKGE---EEVIYPSKELETVLKRTLGVPLF 643

Query: 657  QEQAMQIAITAAGFSPSEADRLRRAMATFKRTGTIHTFERKMVEGMVANDYEREFAERCF 716
            QEQ MQIAI AA +SP EAD+LRR+MA +KR G +   + ++ +GM  N Y  EFA + F
Sbjct: 644  QEQVMQIAIVAADYSPGEADQLRRSMAAWKRHGGLEPHKERLADGMKKNGYTAEFAAQIF 703

Query: 717  NQIKGFGEYGFPESHAASFASLVYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAR 776
             QIKGFG YGFPESHAASFA L YAS WLK + P  F  AL+N+ PMGFY+P Q+++DAR
Sbjct: 704  EQIKGFGNYGFPESHAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDAR 763

Query: 777  EHGVRMLPVDINHSDWDALLEGEGAFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGLKQ 836
             H +++ PVD+  SDWD  LE                   +I  + A+R+G R++KG ++
Sbjct: 764  RHHLQIRPVDVRASDWDCSLE------------------PIIGAQPAIRMGLRMIKGFRE 805

Query: 837  TDMKALVARRGEG-YRSVHDLWLRSGLSRSVLERLADADAFRSIGLDRRAALWAVKALDE 895
             D + +   R +G +  + DL  R+ L     E+LADA A R +  DR  A W V  + +
Sbjct: 806  DDARRIEVARSKGAFADIADLGERARLDARAQEQLADAGALRGLAGDRHRARWEVAGVQK 865

Query: 896  QSAVERLPLFEGAGSDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSR 955
            Q     L LF G  S   Q EP V+LP    GE +  DY ++  +L  HP++ +R +   
Sbjct: 866  Q-----LGLFAGLPS---QEEPTVSLPKPTVGEDLQADYNSVGTTLGPHPLALLRGELKA 917

Query: 956  RGILRSRDLAATATGRWVTVAGLVLVRQRPGSANGVIFMTIEDETGIANIIVWEKTFQKY 1015
            R    S++L     GR V+VAGLV  RQRPG+A+GV F+T+EDE G  N++VW    ++ 
Sbjct: 918  RRCRSSKELMDIEHGRPVSVAGLVTGRQRPGTASGVTFVTLEDEFGNVNVVVWRDLAERQ 977

Query: 1016 RRQVMGSRLVKVRGRLQNQSGVIHVVADHLEDITPMLGLLRREARRF 1062
            R+ ++GS+L+KV GR + +  V H++A  L D++ +L  +   +R F
Sbjct: 978  RQVLVGSQLLKVDGRWEKEGEVRHLIAGRLSDLSSLLDGIHVRSRDF 1024