Pairwise Alignments

Query, 1116 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

Subject, 1083 a.a., DNA polymerase III alpha subunit DnaE2 from Caulobacter crescentus NA1000

 Score = 1014 bits (2621), Expect = 0.0
 Identities = 558/1089 (51%), Positives = 707/1089 (64%), Gaps = 29/1089 (2%)

Query: 6    VFCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKVEGYPF 65
            V+ EL A TNFSFL GA+ AEE+ + A+  GL  +GI DRNS+AGVVRA   AK      
Sbjct: 5    VYAELQATTNFSFLRGASHAEELALTAEALGLTAIGIVDRNSLAGVVRAWTAAKRRSIRV 64

Query: 66   QPGARLVFADGTPDILAYPKNRRGWGHLCRLLSAGNLRSKKGDCTLHLADLLEWQEELLL 125
              G RL F DG P +L YP +R  +G L RLL+ G LR++KG+C L   D L+  E  L 
Sbjct: 65   LTGCRLDFMDGAPSLLCYPTDREAFGRLTRLLTIGQLRAEKGECHLTWRDFLDHSEGQLG 124

Query: 126  IVMQGEGRPEPESLEVLLGTLKEHAGNRLYLGLAPHYDGFDRHDFAVLAAIARKAGIGLL 185
            +++    R   +S E  L  +      R +L  +  Y   D    A L ++ R +G  ++
Sbjct: 125  LIVPP--RVLDDSFEQHLTRMAGDLRGRSWLAASRAYAARDLQRLARLESLGRTSGAPIV 182

Query: 186  ATNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQKNAERHLKGPREMARLFSDYPEAI 245
            ATND LYH P  RPL DV++ +REH  I  AGF L+ NAERH+K P EMARLF  +P A+
Sbjct: 183  ATNDVLYHGPERRPLQDVISCVREHCAIQEAGFRLEANAERHIKSPEEMARLFDRWPRAV 242

Query: 246  ANTRKFFRELAFSLDELSHQYPDENAD-GETPAESLRRLVAEGAAERYPEGVPEKVMRQI 304
              T +    + F L ++  QYPDE    G+T  + L  L  +GAA RYP GV  KV  QI
Sbjct: 243  ERTVEIVERIGFDLKDIREQYPDEPVPPGKTAMQHLTDLTWKGAAWRYPNGVSPKVTAQI 302

Query: 305  DYELELIHDKKYEPYFLTVHKLVKFARSVNILCQGRGSAANSSVCFCLGITDVDPQKFTL 364
              EL LI    Y  YF+TVH +V+ ARS+ ILCQGRGSAANSSVCFCLG+T +DP +  L
Sbjct: 303  QEELRLIEKMDYPNYFITVHDIVREARSMGILCQGRGSAANSSVCFCLGVTAIDPTEHRL 362

Query: 365  LFDRFLSKDRDEPPDIDVDFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVA 424
            LF RF+S++R EPPDIDVDFEH+RREEV+QY+++ YG+ +A +   VI YR RSA R+V 
Sbjct: 363  LFTRFISENRGEPPDIDVDFEHDRREEVMQYVFQRYGRAYAAICGTVIHYRPRSAIRDVG 422

Query: 425  KAFGLSEDVQSALVSSIWG-WGTSPFTEEQAKGAGLDAADPLTRRVLAYASLLMNFPRHL 483
            KA GL+EDV S L  ++WG WG     E+  + AGLD   P   R +  A+ L+ FPRHL
Sbjct: 423  KALGLTEDVTSLLAGTVWGSWGDG-LPEDHLRNAGLDPKAPEIARAVGLANDLIGFPRHL 481

Query: 484  SQHVGGFVITRDRLDEVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKG 543
            SQHVGGFV+T+ RLDE VPI   AM DR  IEWDKDD+D L ++KVD+LALGML  + + 
Sbjct: 482  SQHVGGFVLTKRRLDETVPIGKAAMKDRTFIEWDKDDIDSLGLMKVDILALGMLHAIQRA 541

Query: 544  FKLLEAHYGEP--ITLAEIYQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMY 601
              +L   +G+     LA+I ++    VYDM+C AD+VGVFQ+ESRAQMSMLPRL+PRE Y
Sbjct: 542  MTMLREDHGQDWLKDLADIPKE-VPGVYDMLCAADSVGVFQVESRAQMSMLPRLRPREFY 600

Query: 602  DLVIEVAIVRPGPIQGNMVHPYLKRREAQRRGEAVVYPSP--------ELKAVLERTLGV 653
            DLVI+VAIVRPGPIQG+MVHPYLKRR  +   E V +P P        EL+ +L +T GV
Sbjct: 601  DLVIQVAIVRPGPIQGDMVHPYLKRRNKE---EPVDWPKPSPEHGPPDELQEILGKTFGV 657

Query: 654  PLFQEQAMQIAITAAGFSPSEADRLRRAMATFKRTGTIHTFERKMVEGMVANDYEREFAE 713
            PLFQEQAM +AI AA F+P EAD LR+AMATF+  G+   +  K +EGMV   YER FAE
Sbjct: 658  PLFQEQAMSLAIEAAKFTPDEADGLRKAMATFRNLGSPDAYRNKFIEGMVGRGYERAFAE 717

Query: 714  RCFNQIKGFGEYGFPESHAASFASLVYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVR 773
            RCF QI+GF  YGFPESHAASFA LVY SAW+K  +PD+FCAAL+NAQPMGFY PAQLVR
Sbjct: 718  RCFKQIEGFSHYGFPESHAASFAKLVYVSAWIKWAWPDVFCAALINAQPMGFYQPAQLVR 777

Query: 774  DAREHGVRMLPVDINHSDWDALLEG-EGAFDKNAVHPRHASMREVIKTRKAVRLGFRLVK 832
            DAREHGV +LP DI  SDWD  L      F    V     + +E     KAVRLGFR +K
Sbjct: 778  DAREHGVEVLPPDILTSDWDCTLAPISTGFRPPRVRHDKVACQETRPRWKAVRLGFRQIK 837

Query: 833  GLKQT-DMKALVARRGEGYRSVHDLWLRSGLSRSVLERLADADAFRSIGLDRRAALWAVK 891
            GL++T D+  L+  RGEG R+  + + + G+ +  LE LA+ADAF S+GL RR ALWAVK
Sbjct: 838  GLRETLDIPPLLKARGEGARTPAE-FAQGGVPQKALELLAEADAFASVGLSRREALWAVK 896

Query: 892  AL-DEQSAVERLPLFEGAGSDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMR 950
             L  E  A  + PL  G        E +VALP M A ++V  DYRT +LSLKAHP+ F R
Sbjct: 897  GLKGEHKAPVQAPLLAGLP----LFEERVALPAMAATQEVAEDYRTTSLSLKAHPIGFYR 952

Query: 951  EDFSRRGILRSRDLAATATGRWVTVAGLVLVRQRPGSANGVIFMTIEDETGIANIIVWEK 1010
               + RG++ +  L +   G  V+VAGLVL+RQRPG+A GV+F+T+EDETG+AN +VW+ 
Sbjct: 953  SMLAARGVVPAERLLSLKDGARVSVAGLVLIRQRPGTAKGVVFVTLEDETGVANAVVWKD 1012

Query: 1011 TFQKYRRQVMGSRLVKVRGRLQNQSGVIHVVADHLEDITPMLGLLRRE--ARRFGVNDRA 1068
             F   R  VM +  + V GR+Q    VIHVVA+   D++  L  LR E  A    +  + 
Sbjct: 1013 RFDAARNVVMTASFLIVHGRVQRADNVIHVVAERFTDLSAELSSLRDEPGAPAPRIRQKV 1072

Query: 1069 DGALRPSAD 1077
             G L  S D
Sbjct: 1073 SGRLLRSRD 1081