Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  126 bits (316), Expect = 1e-33
 Identities = 122/405 (30%), Positives = 181/405 (44%), Gaps = 32/405 (7%)

Query: 5   KLTDKQVRGIK---KPGNHPDGGNLYLRVRENGSKSFIVK--ATIDKKQREWTIGSYGSE 59
           KLTDK+++  K   K  N  DG  L LR++ NGSK +I       + K+   + G Y   
Sbjct: 7   KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPD- 65

Query: 60  EHHFSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPE--STTFPAPLFGPFSIELIQ 117
               SL +ARK       +I A GI     +   Q V  E    TF       F+I+   
Sbjct: 66  ---ISLLQARKSLLSAKELI-AQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK--- 118

Query: 118 QIEGGFRNAKHRAQWRSTLETYCKSIWEKRVDRITTDDVLAILRPIWSTKA-ETASRVRG 176
             +           WRS        I +K V  IT  +++ +L+PI +  + ET  R+  
Sbjct: 119 --QNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQ 176

Query: 177 RIERVLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQKLT-- 234
           R+  V+N A   G     NP      L  +    +K ++ +  AL   +LP L   +   
Sbjct: 177 RLNEVMNFATNCGLIQA-NP------LTGIKAAFKKPKKENMAALTPAELPELMSAIANA 229

Query: 235 SIDTIASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLSDSCI 294
           SI       L++ + T  R  E  GA+W+E + E+++WTIPA RMK  REH +PL++  +
Sbjct: 230 SIKRTTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQML 289

Query: 295 EILKRMQKIR-HSDFVFPGTR-EHAPLSDMTLSKVLH--GLCKGYTVHGFRSTFRDWCGE 350
            +L+ M+ I  H DF+FP  R    P +  T +  L   G       HG RS       E
Sbjct: 290 ALLEVMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNE 349

Query: 351 KTDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFI 395
           +  F  +  E+ LAH   + V  AY R + LE R+ +M  W   I
Sbjct: 350 Q-GFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI 393