Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 404 a.a., tyrosine-type recombinase/integrase from Rahnella sp. WP5

 Score =  136 bits (343), Expect = 1e-36
 Identities = 131/413 (31%), Positives = 195/413 (47%), Gaps = 55/413 (13%)

Query: 5   KLTDKQVRGIK---KPGNHPDGGNLYLRVRENGSKSFIVKATIDKKQREWTIGSYGSEEH 61
           KL  +QV   K   KP    DGG LYL V+ NGS+ + +K  ID K++   +G Y     
Sbjct: 2   KLNARQVETAKPKDKPYKMADGGGLYLLVKTNGSRYWRLKYRIDGKEKLLALGVYPD--- 58

Query: 62  HFSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPESTTFPAPLFGPFSIELIQQIEG 121
             SLA+AR +RDE    I AGGI +P      Q VE E+                Q+I  
Sbjct: 59  -VSLADARAKRDEARKGI-AGGI-DPLEVKKEQKVEREAQVK----------NTFQEIAL 105

Query: 122 GFRNAKHRAQWRS-----TLETYCKSIW----EKRVDRITTDDVLAILRPIWSTKA-ETA 171
            + N K + +W +      LE + K ++    ++ V  I   ++L +L+ +    A E A
Sbjct: 106 EWHNMKVK-KWSAGYASDILEAFNKDVFPFIGQRPVADIKPLELLNVLKKMEDRGATEKA 164

Query: 172 SRVRGRIERVLNAAKVRGFRSGENPA-----AWQGHLQLLLPKRQKLQRGHHPALPFQDL 226
            +VR R   V   A V G R+  NPA     A QGH           +  H+P L  ++L
Sbjct: 165 KKVRQRCGEVFRYAIVTG-RAEYNPAPDLTSAMQGH-----------ESTHYPFLTTEEL 212

Query: 227 PTLWQKLT--SIDTIASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAARE 284
           P  ++ L   S   +   A + LI+T  R+GELRGA W E D +K LW I A RMK  R 
Sbjct: 213 PAFFKALAGYSGSELMVLAARLLIITGLRTGELRGALWSEIDTKKALWEISAERMKMRRP 272

Query: 285 HLVPLSDSCIEILKRMQKIR-HSDFVFPGTREHA-PLSDMTLSKVLH--GLCKGYTVHGF 340
           H++PLS   + I+++++ +      +FPG  + +  +S+ ++++V    G     T HGF
Sbjct: 273 HIIPLSTQALTIIEQIRAMTGQFPLLFPGRNDPSKTMSEASINQVFKRIGYTGRVTGHGF 332

Query: 341 RSTFRDWCGEKTDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEA 393
           R T      E+  ++    E  LAH   +A+   Y     L+ RR  M  W A
Sbjct: 333 RHTMSTVLHEQ-GYNTAWIETQLAHVDKNAIRGTYNHAQYLDGRRE-MLQWYA 383