Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 409 a.a., phage integrase family protein (RefSeq) from Shewanella loihica PV-4

 Score =  119 bits (299), Expect = 1e-31
 Identities = 110/408 (26%), Positives = 188/408 (46%), Gaps = 40/408 (9%)

Query: 6   LTDKQVRGIKKPGNHP----DGGNLYLRVRENGSK--SFIVKATIDKKQREWTIGSYGSE 59
           LT+ Q++  +KPG       DGG L LRVR NGSK  ++     + KK+    IG Y   
Sbjct: 8   LTNTQIKN-QKPGPKDIVLSDGGGLQLRVRTNGSKLWNYNYYHPVTKKRVNIGIGPYPD- 65

Query: 60  EHHFSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPESTTFPAPLFGPFSIELIQ-- 117
                LA+AR+   E   ++  G   +P  K   +S++ +           ++++ +   
Sbjct: 66  ---IPLAKAREIALEYRQLVACG--VDPKSKREQESLKLKQEVL-------YTLKNVAAE 113

Query: 118 --QIEGGFRNAKHRAQWRSTLETYC-KSIWEKRVDRITTDDVLAILRPIWSTKA-ETASR 173
             +I+       H A+  S+LE++    + +  +++IT   V+ + RPI +  + ET  R
Sbjct: 114 WLEIKKSEVTKSHAAKTWSSLESHVFPELGDTPLNKITAPLVIKVFRPIEAKGSLETIKR 173

Query: 174 VRGRIERVLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQKL 233
           +  R+  ++N     G+         +   +   PK++ +       L   +LP L + L
Sbjct: 174 LSQRLNEIMNFGVNCGYIDSNPLVGIRAAFKK--PKKESMA-----TLTPSELPLLMRHL 226

Query: 234 T--SIDTIASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLSD 291
           +  SI  +    +++ + T  R  E   A+W+E DL+   WTIPA +MK  REH++PL+ 
Sbjct: 227 SQASIKRVTRCLIEWQLHTMTRPSEAATARWDELDLDNLTWTIPAEKMKRRREHVIPLTQ 286

Query: 292 SCIEILKRMQKIR-HSDFVFPGTRE---HAPLSDMTLSKVLHGLCKGYTVHGFRSTFRDW 347
             + IL  ++ I  H D++FP  R+   H       ++    GL      HG R+     
Sbjct: 287 QMLGILDAIKPISGHRDYIFPADRDPKSHCNTQTANVALKRMGLKGKLVSHGMRALASTT 346

Query: 348 CGEKTDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFI 395
             E+  F  +  EA L+H   + V  AY R + LE RR +M+ W   I
Sbjct: 347 LNEQ-GFESDLIEAALSHVDANQVRAAYNRSDFLERRRPMMSWWSKHI 393