Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 397 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  132 bits (331), Expect = 2e-35
 Identities = 127/412 (30%), Positives = 191/412 (46%), Gaps = 48/412 (11%)

Query: 6   LTDKQVRGIK---KPGNHPDGGNLYLRVRENGSKSFIVKATIDKKQREWTIGSYGSEEHH 62
           LTD + R  K   K     DGG +YL V  +G+K + +K  ++ K++  ++G Y +    
Sbjct: 2   LTDIKARAAKPAEKVYRLYDGGGMYLEVPPSGNKRWRLKYRVNGKEKRLSLGVYPN---- 57

Query: 63  FSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPESTTFPAPLFGPFSIELIQQIEGG 122
             L EAR++RDE+  +I  G   +P  +   Q V P + +F          E++ +    
Sbjct: 58  VGLKEAREKRDELRRLIAEG--IDPAAQRCPQKVAPTADSF----------EMVAREWMD 105

Query: 123 FRNA----KHRAQWRSTLETYC-KSIWEKRVDRITTDDVLAILRPIWSTKAETASRVRGR 177
            R+     +H +     LE Y    I    +D+I   DVL  LR +    A  A+R    
Sbjct: 106 LRSPAWAPRHLSTTCQRLEAYIFPHIGPLPIDQIGPLDVLNALRIVEKRGAVEAARKTLS 165

Query: 178 IERVLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPF-QDLPTLWQKLTSI 236
           I   +    V   R   +P      L+  L  RQ    GH+ A+   +D+  L + +   
Sbjct: 166 ICSQVFRYAVASARIQSDPCR---DLRGALKTRQP---GHYAAIVDPKDVGALMRAIDGY 219

Query: 237 D--TIASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLSDSCI 294
               +   AL+FL LT  R GELR A+W EFD+E+R+WTIPA +MK  REH+VPLS   +
Sbjct: 220 SGAMVVRCALRFLALTFVRPGELRAAEWNEFDMERRIWTIPAHKMKKRREHIVPLSTQAL 279

Query: 295 EILKRMQKIR---HSDFVFPGTREHAP--LSDMTLSKVLHGLCKG---YTVHGFR---ST 343
            +L+ ++      +S  VF   R  +   LS+ TL   L  L  G    T HGFR   S+
Sbjct: 280 AVLRDVRATAPRLNSPMVFQSVRLRSDRGLSENTLLVALRSLGYGQGTMTAHGFRAMASS 339

Query: 344 FRDWCGEKTDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFI 395
             +  G   D      E  LAH  G+ +  AY R   LE R  +M A+  ++
Sbjct: 340 LLNGLGYNPDV----IERQLAHIEGNKIRAAYHRTEYLEERTAMMQAYADYL 387