Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 408 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  140 bits (352), Expect = 9e-38
 Identities = 120/405 (29%), Positives = 188/405 (46%), Gaps = 29/405 (7%)

Query: 2   PINKLTDKQVRGIKKPGNHPDGGNLYLRVRENGSKSFIVKAT--IDKKQREWTIGSYGSE 59
           P+N    +Q +  +K  N  DG  L LRVR  GSK++++  +    +K+   T+G+Y   
Sbjct: 7   PLNDTEVRQAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTLGTYPE- 65

Query: 60  EHHFSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEP-ESTTFPAPLFGPFSIELIQQ 118
               +LA+AR++  +   +I      +   +   Q++      TF       F I+  + 
Sbjct: 66  ---LTLADARRKALDARKLIAQDIDPQEHREGQRQALAAIHEHTFENVATQWFDIKKTEI 122

Query: 119 IEGGFRNAKHRAQ-WRSTLETYCKSIWEKRVDRITTDDVLAILRPIWSTKA-ETASRVRG 176
            E       H A  WRS        I    + +IT   V+ I RPI +  + ET  R+  
Sbjct: 123 TEN------HAASTWRSFKLHVLPYIGSTPISQITAPMVIEIFRPIEAKGSLETVKRLTQ 176

Query: 177 RIERVLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQKLT-- 234
           R+  V+  A   G       +  +   +   PK+QK+      A+   +LP L   L+  
Sbjct: 177 RLNEVMTYAVNTGLIHANPLSGIKAAFKK--PKKQKMA-----AMAPYELPELLSTLSRA 229

Query: 235 SIDTIASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLSDSCI 294
           SI  +    +++ + T  R  E  GA+W+EF+ + RLWTIPA RMK  REH++PLSD+C+
Sbjct: 230 SIKRVTRLLIEWQLHTMTRPNEAAGARWDEFNFDDRLWTIPAERMKMKREHVIPLSDACM 289

Query: 295 EILKRMQKIR-HSDFVFPGTRE---HAPLSDMTLSKVLHGLCKGYTVHGFRSTFRDWCGE 350
            IL+ ++ I  H +++FP  R    H+ +     +    GL    T HG R+       E
Sbjct: 290 LILQELKSISGHREYLFPADRNPKTHSNVQTANAALKRMGLQDRTTAHGLRALASTTLNE 349

Query: 351 KTDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFI 395
           +  F  +  EA LAHT  + V  AY R   LE RR +M  W   I
Sbjct: 350 Q-GFDWDVVEAALAHTDKNQVRSAYNRATYLERRREMMEWWSKSI 393