Pairwise Alignments

Query, 400 a.a., transposase ISRM3 from Sinorhizobium meliloti 1021

Subject, 400 a.a., ISSod4, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  323 bits (828), Expect = 5e-93
 Identities = 161/394 (40%), Positives = 249/394 (63%), Gaps = 9/394 (2%)

Query: 5   KELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDDHLDVERLEGGPANRRNGSS 64
           ++ L  L +G+    + GKD +L  L K L+E  L AEL+ HL          NR+NG +
Sbjct: 8   EQALKDLQSGKS---LTGKDSILGPLIKQLTEAALQAELEQHL----AHDPQPNRKNGKT 60

Query: 65  KKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFPD-FDDKIISMYARGMTVREIQGHL 123
            KT+   +    L  PRDR GTF+P+LI + Q    D  + K++SM++ GM+ R+I  H+
Sbjct: 61  PKTIKHPSGNFELDAPRDRNGTFEPQLIKKNQTTLTDEIERKVLSMFSIGMSYRDINQHV 120

Query: 124 EELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNKAVY 183
           E++YG++VS   +SA+TD ++  +  WQ RPL+  YP+V+ DAI  K++++G   +KAVY
Sbjct: 121 EDMYGLNVSNATVSAITDKLIPELKAWQQRPLDSHYPIVWLDAIHYKVKEDGRYVSKAVY 180

Query: 184 VALAVLADGSKEILGLWIEQTEGAKFWLRVMNELKNRGCQDILIAVVDGLKGFPEAITAV 243
             LA+   G KEILGL + + EGA +WL V+ +L NRG +DILIA VDGL GFPEAI ++
Sbjct: 181 TLLALNMKGKKEILGLHLSENEGANYWLSVLADLNNRGVKDILIACVDGLTGFPEAIASI 240

Query: 244 FPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPALRAIYRARDAEAGLKALEAFEEGYWGQK 303
           FP T  Q C++H IR+S+++V+ K+++  +  L+ +YRA   EA   AL+   E  WG  
Sbjct: 241 FPHTETQLCVIHQIRNSMKYVASKNQKAFMADLKPVYRAVSKEAAEMALDEL-EAKWGDA 299

Query: 304 YPAIAQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMK 363
           YP +  SWRR W ++  +F +PE +R++IYTTNA+EA++ + R+  +++G FP + + +K
Sbjct: 300 YPLVINSWRRKWHNLSHYFKYPEHIRKVIYTTNAVEAVHRQFRKLTKTKGAFPNENSLLK 359

Query: 364 LLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGER 397
           LLY  + NA+++W      W    +Q A+ F  R
Sbjct: 360 LLYAGILNASDKWTMPIHNWSLCLSQLAIYFEGR 393