Pairwise Alignments

Query, 279 a.a., ABC transporter for N-Acetyl-D-glucosamine, permease protein 2 (from data) from Sinorhizobium meliloti 1021

Subject, 281 a.a., carbohydrate ABC transporter permease from Rahnella sp. WP5

 Score =  131 bits (329), Expect = 2e-35
 Identities = 82/287 (28%), Positives = 141/287 (49%), Gaps = 15/287 (5%)

Query: 1   MSKARASFMRTGAVHAALIAYTLIALFPVFLTIVNSFKS-RNAIFREPLAVPTPETFSLI 59
           M+      +R    +A+L+ +    LFP F+ ++ SFKS + AI R P   P    F   
Sbjct: 1   MAATNRKILRKAGFYASLLIFLGAMLFPFFIMLMTSFKSSKEAISRHPTLFPQEWDFH-- 58

Query: 60  GYETVLKQG--DFIGYFQNSIIVTVVSIALVLLFGAMAAFALSEYRFRGNTLMG-----L 112
            Y  +       F+ YF+NS+ V+V++  + + FG + A+ALS  RF+G   +      +
Sbjct: 59  HYVDIFNPQIFPFLSYFKNSLTVSVLASVIAVFFGILGAYALSRLRFKGRVTINASFYTV 118

Query: 113 YLALGIMIPIRLGTVAILQGMVATGLVNTLTALILVYTAQGLPLAVFILSEFMRTVSDDL 172
           Y+  GI++      V + + + A GL +T TAL++    Q LP AVF+L  +  T+  D+
Sbjct: 119 YMFSGILL-----VVPLFKIISALGLYDTTTALVITMVVQTLPTAVFMLKSYFDTIPHDI 173

Query: 173 KNAGRIDGLSEYAIFLRLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPAEATKTVTLG 232
           + A  +DGL+   I   + +PL    + +V V+  +  WND  F  I   + A  T+ +G
Sbjct: 174 EEAAMMDGLNRLQIIFYITVPLAISGIISVFVYCFMVAWNDYLFASIFLSSSANFTLPVG 233

Query: 233 SQIFIGQFVTNWNAVLSALSLAIFPVLVLYVIFSRQLIRGITAGAVK 279
                      W  +++A  +   PV+++Y +  R +   +T G VK
Sbjct: 234 LNTLFSTPDYVWGRMMAASLVTALPVVLMYALSERFIKGNLTDGGVK 280