Pairwise Alignments

Query, 512 a.a., lipoprotein from Sinorhizobium meliloti 1021

Subject, 298 a.a., lipoprotein NlpD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (275), Expect = 7e-29
 Identities = 78/251 (31%), Positives = 124/251 (49%), Gaps = 23/251 (9%)

Query: 281 AYTVKPGDSLNRIAKANGVSVAALKQANGLSTE-AIRIGQKLNIPSASAKTPATDAVVTA 339
           +Y VK GD+L  I+ A G   A + + N L     I  GQ L +    ++      ++  
Sbjct: 48  SYKVKKGDTLYSISWAVGKDYAEIAKINQLDKSFTIYPGQVLYLTYDHSQNSKASTILGG 107

Query: 340 SVSAKKNEAQAASTEQGKLTETKA--------------PAAKESVSEVAIRSDGNEDL-- 383
             SA K   Q  S+++  +++  A                AK + S  + +   N  +  
Sbjct: 108 INSANKGLYQLNSSKKQYVSDDSAVEGLSSEPQKKTLDQKAKPAYSATSSQQRFNSSIVA 167

Query: 384 PKST---GIGKYRWPVRGAVVAAYGANVDGNRNDGINISVPEGTPIKAAENGVVIYSGSS 440
           P ST    + +++WPVRG ++  Y AN  GN+  GI I+   G  IKAA +G V+Y+GS+
Sbjct: 168 PTSTLPDSVSQWQWPVRGKLIGTYSANEQGNK--GIKIAGKRGDIIKAAADGRVVYAGSA 225

Query: 441 LKELGNAVLVRHDDGTVTVYGNAAELKVQRGQKVQRGQTLASSGMTGRATRPQVHFEVRK 500
           L+  GN V+++H D  ++ Y +A ++ V   Q V  GQT+A  G TG   +  + FE+R 
Sbjct: 226 LRGYGNLVIIKHSDDYLSAYAHADQILVDEKQHVLAGQTIAKMGSTG-TNQVMLRFEIRY 284

Query: 501 NATPVNPATYL 511
           +   VNP  YL
Sbjct: 285 HGQSVNPLNYL 295



 Score = 27.7 bits (60), Expect = 6e-04
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 168 VRQGDTVTVLARRFGVPEKEILKANGLKSASQVEPGQRLVIPTFGTAGSAAKAAASG 224
           V++GDT+  ++   G    EI K N L  +  + PGQ L +    +  S A     G
Sbjct: 51  VKKGDTLYSISWAVGKDYAEIAKINQLDKSFTIYPGQVLYLTYDHSQNSKASTILGG 107