Pairwise Alignments

Query, 542 a.a., peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 536 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  410 bits (1054), Expect = e-119
 Identities = 224/531 (42%), Positives = 342/531 (64%), Gaps = 13/531 (2%)

Query: 1   MTMDKLLTVCGLSLE--VARTGQQVVKSVSFDLAPGEIFGIVGESGSGKTLATRALISLL 58
           M  D L+ V  L++E  V    Q+VV+ VSFD+  GE   +VGESGSGK++   +++ LL
Sbjct: 1   MNQDNLIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLL 60

Query: 59  P-PTIKVADGSVSYKGRDVLKMKENELRHLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGL 117
           P P      G++ Y G+++L +KE  +RH+RG  I ++FQEPMTSLNP  +I +Q+ E L
Sbjct: 61  PYPLAHHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVL 120

Query: 118 ILHTKASAQERRSLILDMLKRVGIRDPEGALSSYPHEFSGGMRQRIMLASVMLLKPALLI 177
            +H   S +      L++L+ VGI +P   L + PHE SGG RQR+M+A  +  +P LLI
Sbjct: 121 GIHKGLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLI 180

Query: 178 ADEPTTALDAVIQRDVMELMVELTRAEGTAILLISHDLPMVARYTSRIVVMEKGAIVEKG 237
           ADEPTTALD  +Q  ++EL+ +L    G ++LLISHDL +V R   R+ VM++G IVE+ 
Sbjct: 181 ADEPTTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQA 240

Query: 238 RTEDLLKAPQHPYTKKLLSSLPFRGRPRQIDLTSVPMISARDIIVDYAGRKSLFRKNKPK 297
             E+L +APQHPYT++LL + P  G P   ++   P++   D+ V +  +K LF++    
Sbjct: 241 SCEELFRAPQHPYTRELLGAEP-SGTPAS-NVVGPPLLQVEDLKVWFPIKKGLFKRTVDY 298

Query: 298 -RALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGLVTESEGRIQFQGRP----RTENW 352
            +A+ G+   + +G+ + +VG SGSGK+TLG  I  L+  S+G I+F+G+       +  
Sbjct: 299 IKAVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLI-GSQGGIRFEGKQLDSLTQQQV 357

Query: 353 TDYRLNCQMVFQDPYSSLDPRMTIEALVEEALRPVPGLDGKAKRKRT-LETLEEVGLGVD 411
              R   Q+VFQDP+ SL PRM +  +V E LR +  +  +A++++  +  L+EVGL  +
Sbjct: 358 RPLRREMQVVFQDPFGSLSPRMCVSQIVGEGLR-IHKIGTEAEQEQAIIAALKEVGLDPE 416

Query: 412 YAGRYPHELSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKRYGF 471
              RYPHE SGGQRQR+AIARA+  +P  ++ DEP SALD TV+ QV++L   LQ +Y  
Sbjct: 417 TRNRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNL 476

Query: 472 SCLFISHDLGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPKEAYTRRLLSA 522
           + LFISHDL VV+ ++ +++V++ G+++E+GD  +IF +P+  YT++LL A
Sbjct: 477 TYLFISHDLAVVKALSHQLMVVKHGQVVEQGDARSIFAAPQHPYTQQLLEA 527



 Score =  182 bits (462), Expect = 3e-50
 Identities = 113/264 (42%), Positives = 154/264 (58%), Gaps = 18/264 (6%)

Query: 274 MISARDIIVDYAGRKSLFRKNKPKRALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGL 333
           +I  RD+ V++   +      + +R + GVS DI  GE +ALVG SGSGK+    +I  L
Sbjct: 6   LIEVRDLAVEFIVGE------RRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRL 59

Query: 334 VT-----ESEGRIQFQGRP----RTENWTDYRLN-CQMVFQDPYSSLDPRMTIEALVEEA 383
           +         G IQ+ G+     + +     R N   M+FQ+P +SL+P  +IE  + E 
Sbjct: 60  LPYPLAHHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEV 119

Query: 384 LRPVPGLDGKAKRKRTLETLEEVGLGVDYAG--RYPHELSGGQRQRVAIARAIARRPRFL 441
           L    GL GK   +RTLE LE VG+   +      PHELSGGQRQRV IA A+A  P  L
Sbjct: 120 LGIHKGLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELL 179

Query: 442 IADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEE 501
           IADEP +ALDVTV+ ++L+L   LQ R G S L ISHDL +V ++A RV VMQ G I+E+
Sbjct: 180 IADEPTTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQ 239

Query: 502 GDRDTIFDSPKEAYTRRLLSAIPA 525
              + +F +P+  YTR LL A P+
Sbjct: 240 ASCEELFRAPQHPYTRELLGAEPS 263