Pairwise Alignments

Query, 542 a.a., peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  409 bits (1051), Expect = e-118
 Identities = 221/523 (42%), Positives = 327/523 (62%), Gaps = 9/523 (1%)

Query: 4   DKLLTVCGLSLEVARTGQQVVKSVSFDLAPGEIFGIVGESGSGKTLATRALISLLPPTIK 63
           D L+ +  LS  VA   Q VV+++  D+ PGE   +VGESGSGK++   +++ LLP    
Sbjct: 9   DNLIEIRDLS--VAFNDQTVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPENEA 66

Query: 64  VADGSVSYKGRDVLKMKENELRHLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILHTKA 123
              GS+ Y+G++++      LR LRG  I ++FQEPMTSLNP  ++ +Q+ E L+LH   
Sbjct: 67  HTSGSIRYRGQELVGADTQALRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLMLHKGL 126

Query: 124 SAQERRSLILDMLKRVGIRDPEGALSSYPHEFSGGMRQRIMLASVMLLKPALLIADEPTT 183
             +  R  IL++L  VGI++P   L +YPH+ SGG RQR+++A  +  +P LLIADEPTT
Sbjct: 127 GGKAARQRILELLTLVGIQNPVERLKAYPHQLSGGQRQRVIIAMALACEPELLIADEPTT 186

Query: 184 ALDAVIQRDVMELMVELTRAEGTAILLISHDLPMVARYTSRIVVMEKGAIVEKGRTEDLL 243
           ALD  +QR ++ L+  L +  G ++LLISHDL +V     R+ VM+ G IVE+   E L 
Sbjct: 187 ALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETLF 246

Query: 244 KAPQHPYTKKLLSSLPFRGRPRQIDLTSVPMISARDIIVDYAGRKSLFRKNKPKRALHGV 303
            AP+HPY+ +LL + P      + D   V  +  +D+ V +     LFR+ +  RA+ G+
Sbjct: 247 SAPKHPYSCELLHAEPEGEALPRDDREEV--LQVQDLRVSFPLSGGLFRRKEYLRAVDGI 304

Query: 304 SIDIHEGEVVALVGGSGSGKTTLGRTIAGLVTESEGRIQFQGRP----RTENWTDYRLNC 359
           S+ I  G+ + +VG SGSGK+TLG+ I  L+ ESEG I+FQG+       +    +R   
Sbjct: 305 SLSIQRGKTLGIVGESGSGKSTLGQAILRLI-ESEGSIRFQGQALDHLSQKALRPWRKQM 363

Query: 360 QMVFQDPYSSLDPRMTIEALVEEALRPVPGLDGKAKRKRTLETLEEVGLGVDYAGRYPHE 419
           Q+VFQDP+ SL PRM+++ ++ E L        +    R ++ L+EVGL      RYPHE
Sbjct: 364 QVVFQDPFGSLSPRMSVQQIISEGLEVHQPSSPEQCEARVIQALKEVGLDPATRHRYPHE 423

Query: 420 LSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHD 479
            SGGQRQR+AIARA+  +P  ++ DEP SALD TV+ QV+ L   LQ++Y  + LFISHD
Sbjct: 424 FSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQQKYDLTYLFISHD 483

Query: 480 LGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPKEAYTRRLLSA 522
           L VV  +A  ++V++DG+++E+G    +FDSP+  YT+ LL+A
Sbjct: 484 LAVVRALAHDMIVIKDGKVVEQGASHDVFDSPQHPYTKELLAA 526



 Score =  177 bits (449), Expect = 9e-49
 Identities = 106/236 (44%), Positives = 146/236 (61%), Gaps = 11/236 (4%)

Query: 300 LHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGLVTESE----GRIQFQGRPR----TEN 351
           +  + +DI  GE +ALVG SGSGK+    +I  L+ E+E    G I+++G+      T+ 
Sbjct: 27  VRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPENEAHTSGSIRYRGQELVGADTQA 86

Query: 352 WTDYRLN-CQMVFQDPYSSLDPRMTIEALVEEALRPVPGLDGKAKRKRTLETLEEVGLG- 409
             + R N   M+FQ+P +SL+P  ++E  + E L    GL GKA R+R LE L  VG+  
Sbjct: 87  LRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLMLHKGLGGKAARQRILELLTLVGIQN 146

Query: 410 -VDYAGRYPHELSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKR 468
            V+    YPH+LSGGQRQRV IA A+A  P  LIADEP +ALDVTV+ ++L L   LQ+R
Sbjct: 147 PVERLKAYPHQLSGGQRQRVIIAMALACEPELLIADEPTTALDVTVQRKILLLLKSLQQR 206

Query: 469 YGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPKEAYTRRLLSAIP 524
            G S L ISHDL +V  +A RV VM+ G I+E+   +T+F +PK  Y+  LL A P
Sbjct: 207 LGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETLFSAPKHPYSCELLHAEP 262