Pairwise Alignments

Query, 542 a.a., peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 524 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N1B4

 Score =  404 bits (1037), Expect = e-117
 Identities = 216/514 (42%), Positives = 320/514 (62%), Gaps = 9/514 (1%)

Query: 14  LEVARTGQQVVKSVSFDLAPGEIFGIVGESGSGKTLATRALISLLPPTIKVADGSVSYKG 73
           L VA +GQ VV+++  D+ PGE   +VGESG GK++   +++ LLP T     GS+ Y+G
Sbjct: 11  LNVAFSGQTVVRNLCLDIRPGECLALVGESGCGKSVTAHSILQLLPETGTETTGSIRYRG 70

Query: 74  RDVLKMKENELRHLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILHTKASAQERRSLIL 133
           ++++      LR LRG  I ++FQEPMTSLNP  ++ +Q+ E L+LH     +  ++ IL
Sbjct: 71  QELIGTDIKTLRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLLLHRGLGGKAAQARIL 130

Query: 134 DMLKRVGIRDPEGALSSYPHEFSGGMRQRIMLASVMLLKPALLIADEPTTALDAVIQRDV 193
           ++L+ VGI+ PE  L +YPH+ SGG RQR+M+A  +  +P LLIADEPTTALD  +QR +
Sbjct: 131 ELLQLVGIQKPEERLKAYPHQLSGGQRQRVMIAMALACEPELLIADEPTTALDVTVQRKI 190

Query: 194 MELMVELTRAEGTAILLISHDLPMVARYTSRIVVMEKGAIVEKGRTEDLLKAPQHPYTKK 253
           + L+  L +  G ++LLISHDL +V     R+ VM+ G IVE+   E L   P+HPY+  
Sbjct: 191 LLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETLFTEPKHPYSCV 250

Query: 254 LLSSLP-FRGRPRQIDLTSVPMISARDIIVDYAGRKSLFRKNKPKRALHGVSIDIHEGEV 312
           LL + P     PR        ++   ++ V +A    LF++    RA+ G+S+++  G+ 
Sbjct: 251 LLHAEPEGEALPRD---EREKVLEVDNLQVHFAIGGGLFQRKTYLRAVDGISLNVQRGKT 307

Query: 313 VALVGGSGSGKTTLGRTIAGLVTESEGRIQFQGRP----RTENWTDYRLNCQMVFQDPYS 368
           + +VG SGSGK+TLG+ I  L+ +SEG I+FQG        +    +R   Q+VFQDP+ 
Sbjct: 308 LGIVGESGSGKSTLGQAILRLL-DSEGSIRFQGEALDGLTQKQLRPWRKKMQVVFQDPFG 366

Query: 369 SLDPRMTIEALVEEALRPVPGLDGKAKRKRTLETLEEVGLGVDYAGRYPHELSGGQRQRV 428
           SL PRM++  ++ E L             + +  LEEVGL      RYPHE SGGQRQR+
Sbjct: 367 SLSPRMSVAQIISEGLEVHSQSTPDECEAQVIRVLEEVGLDPQSRHRYPHEFSGGQRQRI 426

Query: 429 AIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVAD 488
           AIARA+  +P  ++ DEP SALD TV+ QV+ L   LQ++YG + LFISHDL V+  +A 
Sbjct: 427 AIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQEKYGLTYLFISHDLAVIRALAH 486

Query: 489 RVVVMQDGRIIEEGDRDTIFDSPKEAYTRRLLSA 522
            ++V++DG+++E G    +FDSP+  YT+ LL+A
Sbjct: 487 DMIVIKDGKVVESGASHDVFDSPQHPYTKELLAA 520



 Score =  170 bits (431), Expect = 1e-46
 Identities = 110/272 (40%), Positives = 158/272 (58%), Gaps = 24/272 (8%)

Query: 274 MISARDIIVDYAGRKSLFRKNKPKRALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGL 333
           +I  RD+ V ++G+            +  + +DI  GE +ALVG SG GK+    +I  L
Sbjct: 5   LIEIRDLNVAFSGQT----------VVRNLCLDIRPGECLALVGESGCGKSVTAHSILQL 54

Query: 334 V----TESEGRIQFQGRPRT----ENWTDYRLN-CQMVFQDPYSSLDPRMTIEALVEEAL 384
           +    TE+ G I+++G+       +   + R N   M+FQ+P +SL+P  ++E  + E L
Sbjct: 55  LPETGTETTGSIRYRGQELIGTDIKTLRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETL 114

Query: 385 RPVPGLDGKAKRKRTLETLEEVGLGV--DYAGRYPHELSGGQRQRVAIARAIARRPRFLI 442
               GL GKA + R LE L+ VG+    +    YPH+LSGGQRQRV IA A+A  P  LI
Sbjct: 115 LLHRGLGGKAAQARILELLQLVGIQKPEERLKAYPHQLSGGQRQRVMIAMALACEPELLI 174

Query: 443 ADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRIIEEG 502
           ADEP +ALDVTV+ ++L L   LQ+R G S L ISHDL +V  +A RV VM+ G I+E+ 
Sbjct: 175 ADEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQA 234

Query: 503 DRDTIFDSPKEAYTRRLLSAIP---ALDQNEK 531
             +T+F  PK  Y+  LL A P   AL ++E+
Sbjct: 235 PCETLFTEPKHPYSCVLLHAEPEGEALPRDER 266