Pairwise Alignments

Query, 271 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 271 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  120 bits (300), Expect = 4e-32
 Identities = 69/253 (27%), Positives = 141/253 (55%), Gaps = 9/253 (3%)

Query: 20  GLAFMHLPILLIFLYAFTTEEKSYQFPPPGLTTQWFAVAWNRPDVWAALTLSVKVASIAT 79
           GL F++ P+L++ +Y+F   E        G + +W+   +    +  A+  S+++A  ++
Sbjct: 14  GLLFLYAPMLILVIYSFN--ESKLVTVWGGFSPKWYGELFKDQQILDAVWTSLRIAFYSS 71

Query: 80  AVALVLGTLCAAAVSQ-TRFFGRETISLLVILPIALPGIITGIALRSAF-SMADI----- 132
            +A+++GT+ A  +++  R + + T+S ++  P+ +P +ITG++L   F  MAD+     
Sbjct: 72  TMAVIIGTMAAFVMTRFKRSWAKLTLSNMITAPLVMPEVITGLSLLLLFVHMADLLGWPK 131

Query: 133 PFSFWTIVLGHATFCIVVVYNNAVARFRRISGSLIEASMDLGADGFQTFRYVILPNIGTA 192
                T+ + H+TFC   V     +R R +  S+ EA+MDLGA   +TF  + +P I  A
Sbjct: 132 ERGMVTVWIAHSTFCAAYVAVVVSSRLRELDRSIEEAAMDLGATPLKTFFLITVPMISPA 191

Query: 193 LLAGGMLAFALSFDEVIVTTFTAGQQSTLPIWMLEELIRPRQRPVTNVVAMVVVMATFLP 252
           L+AG +L+F+LS D++++++F +G  +T    ++   +R    P  N +A ++++   L 
Sbjct: 192 LVAGWLLSFSLSLDDLVISSFASGPGATTLPMVVFSSVRLGVSPKINALATLIILCVSLI 251

Query: 253 ILGAYYLTRDGDQ 265
              ++Y+ R  ++
Sbjct: 252 AFLSWYMARRAEK 264