Pairwise Alignments

Query, 398 a.a., transporter from Sinorhizobium meliloti 1021

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  141 bits (355), Expect = 3e-38
 Identities = 81/313 (25%), Positives = 155/313 (49%), Gaps = 4/313 (1%)

Query: 77  VVVKPAERAVVNDRLNAIGNGEAIRSVTVTPTATGNLTEILVKSGDRITEGQVIARLDSD 136
           VV +  +   ++  L+ +G  +A +SV +     G +  I V++  ++ +GQ++ +LD D
Sbjct: 34  VVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLDDD 93

Query: 137 DQMIAAEQARLTRDSAREKVERYRNLSTARAVTAVEVRDSEIALQAAELALKTAELDLKR 196
               A  +A+      + K+  Y  L    A+T  E+      ++  +  L  A+ +L  
Sbjct: 94  KAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQANLAD 153

Query: 197 RDIVAPSKGVVGIITVNIGDYVTTSTPIAVVDDRSQILVDFWVPERFAGKISVDQPVTAS 256
             I AP  G VG I  + G +V+  + +  +D+ S + +D  +PER+  ++S    V  S
Sbjct: 154 LHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGS 213

Query: 257 AIAQPGRALQGVVHAIDNRLDPESRTLRVRARLENPDDMLRAGMSFSVTVAFDGDRYPTV 316
           + A P    +G V A+D+R++ E+  LRVR    NPD  L+ GM  S  + F     P +
Sbjct: 214 SEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISAPII 273

Query: 317 DPLAIQWSSEGSFIWRVKGDK-SERVPIKIIQRNPDKVLVDAELAEGDRVVTEGVQRLRD 375
              A+++S    F++ +  D  ++R  + +  R  ++V+++  L  G+++V +G+  +RD
Sbjct: 274 PVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRD 333

Query: 376 G---GVVRIAGEP 385
                 V + G P
Sbjct: 334 NARVSEVTVEGRP 346