Pairwise Alignments

Query, 789 a.a., exoribonuclease II protein from Sinorhizobium meliloti 1021

Subject, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

 Score =  370 bits (951), Expect = e-106
 Identities = 262/769 (34%), Positives = 391/769 (50%), Gaps = 39/769 (5%)

Query: 40  VPSREVLMRFIAENPQHASKREIAKAFGLKGEARVE-LKGLLRSLEEDG-LVEKKRKSLV 97
           +PSRE ++ F+ +     ++ ++ +A  L+GE + E L+  LR++E DG LV  +R+   
Sbjct: 22  IPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAMERDGQLVFTRRQCYA 81

Query: 98  RPGGLPPVTVLDITIRDVDGDLIGRPAEWLDDDGVAPAVLIKQSSVARAKGKTPVGGLGD 157
            P  L  V    I  +D  G        W+  +G     L K+  +     +      GD
Sbjct: 82  LPEKLEMVKGYVIGHKDGHG--------WVRPEGS----LNKEGDILLPHHQMRTLIHGD 129

Query: 158 RVLAKIFPAKERGGPAYTARIIKVLDKRKDAVLGVFRATPGGGGRLMPIDKR-GEELLID 216
            VL +     +RG      R++++L++R   ++G F     G   ++P D R   ++LI 
Sbjct: 130 FVLVQPSGTDKRGRKE--GRLVRILEERNGQIVGRF-FFEYGYSYVVPDDSRIHHDILIP 186

Query: 217 PEFIGDAKEGDLVEAHLSRIG-RYGLPRAQVQNVVGSVASEKAISMIAIHAHGIPHVFPE 275
            +    A+ G++V   ++  G R      +V  V+G   +    + IAI  H IPH +P 
Sbjct: 187 NDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPA 246

Query: 276 RVLQEA----EAARPATMAHREDWRTLPLITIDPADAKDHDDAVYAEPDSSPDNPGGVIV 331
            V Q+     E         R D R LPL+TID  DA+D DDAVY E        GG  +
Sbjct: 247 EVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKG----GGWRL 302

Query: 332 TVAIADVSWYVRARSALDLEALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAV 391
            VAIADVS+YVR  +ALD EA+ RGNSVYFP +VVPMLPE +SN LCSL   VDR  +  
Sbjct: 303 WVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVC 362

Query: 392 RMRFSKEGRKAGHTFHRIMMRSAAKLSYQQAQTAIDGAPDDKTG-PILDTILKPLWEAYR 450
            M  S+ G+ +G+  +  +M S A+L+Y +    ++G  + +     L   L+ L + Y+
Sbjct: 363 EMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQ 422

Query: 451 TLTRGRERRQPLELDVPERKIILKPDGTVDRVFVPERLDAHKLIEEMMIQANVAAAETLE 510
            L   R+ R  +E +  E K I      ++ +    R DAHKLIEE MI AN+A+A  +E
Sbjct: 423 VLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVE 482

Query: 511 QKRQVLIYRVHDQPSLAKQESLREFLATLDIALAKGGNMRANHFNGILAKADGKPYETIV 570
           + ++  +YRVH+ P   +    R+FL  L + L+ G       +  ++ +   +P + ++
Sbjct: 483 KAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELI 542

Query: 571 NQMVLRSQSQAIYSPENIGHFGLNLLRYAHFTSPIRRYADLIVHRALVSALGLGEG---- 626
             M+LRS  QA+Y+ +N GHFGL L RYAHFTSPIRRY DL++HRA+   +   EG    
Sbjct: 543 QTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQD 602

Query: 627 -----GIMPEEEAALDDIAAEISTFERRAMAAERDTIDRLIAHHLNGRVGEEFDGRVSGV 681
                G        +D    + S  ERRA  A R+  D L   ++   VGEE +G V+ V
Sbjct: 603 RWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANV 662

Query: 682 TKAGLFVTLPAYGADGFIPISTLGRDYFIYDEAHQALSGEKSGLGYRLGDPVQVKLVEAV 741
           T  G FV L     DG + ISTL  DY+ YD   Q L GE  G  YRLGD V+VK++   
Sbjct: 663 TSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVN 722

Query: 742 PLAGALRFEMLSEGRKMPTAMRSFHKAGRRDRTGA--RKRPGTRPPRGR 788
                + FE++   RK+    ++  K     R  A  +K   T+   G+
Sbjct: 723 LDDRQIDFELVETSRKLRGQGKTAKKRADEARAKAQGKKEAATKGACGK 771