Pairwise Alignments

Query, 789 a.a., exoribonuclease II protein from Sinorhizobium meliloti 1021

Subject, 824 a.a., ribonuclease R (RefSeq) from Shewanella loihica PV-4

 Score =  364 bits (935), Expect = e-105
 Identities = 254/721 (35%), Positives = 371/721 (51%), Gaps = 51/721 (7%)

Query: 40  VPSREVLMRFIAENPQHASKREIAKAFGLKGEARVE-LKGLLRSLEEDGLVEKKRKSLVR 98
           +PSRE ++ ++       ++ +IA+A  +  E ++E L+  LR++E DG +   R     
Sbjct: 18  IPSREYILDYLRSQQSPLNREKIAQALNISDEEQLEALRRRLRAMERDGELVFTRGQAY- 76

Query: 99  PGGLPPVTVLDITIRDVDGDLIGRPAEWLDDDGVAPAVLIKQSSVARAKGKTPVGGLGDR 158
             GLP    +D+    V G   G     LD+ G    + I    +            GD+
Sbjct: 77  --GLPER--MDLLSGTVLGHKDGFGFLKLDEGG--DDLFINNRDMLMYFH-------GDK 123

Query: 159 VLAKIFPAKERGGPAYTARIIKVLDKRKDAVLGVFRATPGGGGRLMPIDKRGEELLIDPE 218
           VLA+      +G     ARI+++  +R   ++G F    G    +    +  +E+LI  +
Sbjct: 124 VLAQKAGVDRKG--RREARIVRLTHERTAPLVGRFHLDSGMAFVITDDKRITQEILIPDD 181

Query: 219 FIGDAKEGDLVEAHLSRI-GRYGLPRAQVQNVVGSVASEKAISMIAIHAHGIPHVF---- 273
               A++GD+V   L+R  GRY     +V  V+G   +      IA+  + +PH +    
Sbjct: 182 DRNGARQGDVVVIELTRRPGRYMKAAGKVTEVLGKEMAPGMEIEIALRNYDLPHTWSSLI 241

Query: 274 -------PERVLQEAEAARPATMAHREDWRTLPLITIDPADAKDHDDAVYAEPDSSPDNP 326
                  P+ V +E +  R        D R LPL+TID  DA+D DDAVYAE   S    
Sbjct: 242 EKKLRKIPDEVTEEDKLGRV-------DLRKLPLVTIDGEDARDFDDAVYAETKKS---- 290

Query: 327 GGVIVTVAIADVSWYVRARSALDLEALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDR 386
           GG  + VAIADVS YVR  SALD EA  RGNSVYFP +V+PMLPE++SN LCSL  GVDR
Sbjct: 291 GGWRLWVAIADVSHYVRTESALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDR 350

Query: 387 PALAVRMRFSKEGRKAGHTFHRIMMRSAAKLSYQQAQTAIDGAP-DDKTGPILDTILKPL 445
             +   M  S  G+ +G+ F+  +M S A+L+Y Q    ++G    D+  P+    L+ L
Sbjct: 351 LCMVAEMTISAAGKLSGYKFYPAVMHSHARLTYTQVAEMLEGGEVSDELKPLFPH-LQTL 409

Query: 446 WEAYRTLTRGRERRQPLELDVPERKIILKPDGTVDRVFVPERLDAHKLIEEMMIQANVAA 505
              Y TL   R +R  +  +  E + I   D  ++R+    R  AHK+IEE MI ANVAA
Sbjct: 410 QSLYLTLDDTRAQRGAIAFETTETQFIFNADRKIERIEPRTRNQAHKIIEECMILANVAA 469

Query: 506 AETLEQKRQVLIYRVHDQPSLAKQESLREFLATLDIALAKGGNMRANHFNGILAKADGKP 565
           A+ +++ +  ++YRVH+ PS  K  + ++FL    +++  G       +  ++ +   +P
Sbjct: 470 AKFVKKHKGEVLYRVHEAPSEQKLTNFKDFLKERGLSMGGGLEPEPADYQALMEQVVDRP 529

Query: 566 YETIVNQMVLRSQSQAIYSPENIGHFGLNLLRYAHFTSPIRRYADLIVHRALVSALGLGE 625
              ++  M+LRS  QA Y+P+N GHFGL L  Y+HFTSPIRRY DLI+HR +   L    
Sbjct: 530 DAELIQVMLLRSMRQATYTPDNEGHFGLALEEYSHFTSPIRRYPDLILHRVIRYLLAKER 589

Query: 626 G---------GIMPEEEAALDDIAAEISTFERRAMAAERDTIDRLIAHHLNGRVGEEFDG 676
           G         G    +   LD +  E S  ERRA  A RD  D L    +   VG+ F+ 
Sbjct: 590 GEASDKWTPDGGYHYQIEELDLLGEECSNTERRADEATRDVSDWLKCEFMRDHVGDTFEA 649

Query: 677 RVSGVTKAGLFVTLPAYGADGFIPISTLGRDYFIYDEAHQALSGEKSGLGYRLGDPVQVK 736
            ++ VT  G+FV L     DG + ISTLG DY+ YD   Q L GE SG  Y++GDPV VK
Sbjct: 650 VIASVTHFGMFVRLSDLFIDGLVHISTLGGDYYHYDNMRQRLVGEASGQVYQIGDPVTVK 709

Query: 737 L 737
           +
Sbjct: 710 V 710