Pairwise Alignments

Query, 924 a.a., ribonuclease E protein from Sinorhizobium meliloti 1021

Subject, 1050 a.a., Rne/Rng family ribonuclease from Rhodanobacter denitrificans MT42

 Score =  395 bits (1015), Expect = e-114
 Identities = 264/724 (36%), Positives = 374/724 (51%), Gaps = 55/724 (7%)

Query: 184 AVVDTDSISEDIDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVADRHIRKPRKQY-- 241
           A+VD  ++  D+D      +    + + G    +E+      +E  A+RH   P K+   
Sbjct: 17  AIVDGQNLY-DLDIEIPSREQKKSNIYKGRITRVEASLEACFVEYGAERHGFLPLKEISR 75

Query: 242 ------------RIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARG 289
                        I+E+IK  Q ++VQV KEERGNKGAALTT++SLAGRY VLMPN  + 
Sbjct: 76  EYFTPGLDPHKANIRELIKEGQEVVVQVEKEERGNKGAALTTFISLAGRYMVLMPNNPKA 135

Query: 290 GGISRKITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVR 349
           GG+SR+I   +DR+ LKE    + VP  +G+I+RTAG  R   E++ D +YL+ LW+++ 
Sbjct: 136 GGVSRRIEG-EDRQALKEALDHVTVPDDVGLIVRTAGLGRDAEELQWDLDYLLTLWKSIS 194

Query: 350 TLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVV 409
                  AP L+Y+E  L  R++RD    DI EI++  E  Y +A+ FM+ +MP+  + +
Sbjct: 195 EAASKQKAPFLIYQESKLFIRALRDYLRSDIGEILIDDEPLYNDARDFMQQVMPNALRKL 254

Query: 410 QPYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIE 469
           + YRD  P+F+R  IE Q++     QV L SGG I+I+QTEAL +IDVNS ++T+   IE
Sbjct: 255 KLYRDDTPLFTRYQIETQIESAFDRQVRLPSGGSIVIDQTEALTAIDVNSSKATKGSDIE 314

Query: 470 DTALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQV 529
           +TA  TN EAA E+ARQ R+RD  GL+VIDFIDM+  ++ R VE +LKD LK DRAR+Q+
Sbjct: 315 ETAFNTNCEAAVEIARQARIRDAGGLLVIDFIDMDSPKHQREVEDRLKDALKLDRARVQI 374

Query: 530 GRISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTT 589
           GRIS FGLLEMSRQR+R S+ E+T  TCP C G GHIR   S++L  LR IEEH +K+ T
Sbjct: 375 GRISRFGLLEMSRQRLRPSLGEATQITCPRCEGHGHIRGVESLSLSTLRLIEEHAMKDNT 434

Query: 590 HDISVRTTPDIALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVR 649
             + V+    +A +LLN+KR+S+ + E R    + I AD  +   H  I R    E    
Sbjct: 435 GQVLVQAPTSVANFLLNEKRASVVEIELRHKAHVVIVADEKLETPHIEIQRIREAE---- 490

Query: 650 IDQILQFEPEPEDEEEVLIEEESDEEEVEEIAAERQDPKKGQTDEQGGRKRKRRRRRRGK 709
               +    +P  E    +E     +  + + +  Q    G         R+        
Sbjct: 491 ----MGEHSKPSYERLTAVEASELPKMGQTLGSGEQPAVSGIVPASPAPVREEVAAPVAA 546

Query: 710 GAGQGADEAFADAADAAEDETG------------DEAAVDDAEDEVDATDALNGDSEQKR 757
            A   A    A A  AA    G            + AA       VD      GD   + 
Sbjct: 547 AAPPAARRQAAAAPAAAAPSGGIISRLFGWFRSAEAAAPAPIPKRVDN----GGDGSSRS 602

Query: 758 KRRRRGKRGGRRSRQDELAEAEGETGMAAEAGEGAGDDAEAEVAPAAAAEETSPDIAAAA 817
           +R  RG R G  S      +   E   AA+ G       +          ET P  A  +
Sbjct: 603 RRDERGNRPGASSGAPSPRQPRRE---AAQQGSSKPSAQQPARGNRQRGNETQPRPAQQS 659

Query: 818 AVEAAA--EEPKPA-----KPRRSRKKAVKAEEPAESVDEVAEKTVEAQPEATEAAP-EA 869
             +AA    +PKPA      P R+ +K    + P   V+     TV+ +P  T A P +A
Sbjct: 660 QAQAARADRQPKPAAATENTPARAERKPNPPQSP--KVERQPRITVDERP--TAAPPDDA 715

Query: 870 VEEA 873
           V+EA
Sbjct: 716 VKEA 719



 Score = 79.7 bits (195), Expect = 9e-19
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 10/173 (5%)

Query: 3   EKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62
           ++MLI+A+  EE RV +V G  + + D E   ++Q + NIY  ++TRVE SL+A FV+YG
Sbjct: 2   KRMLINATQREELRVAIVDGQNLYDLDIEIPSREQKKSNIYKGRITRVEASLEACFVEYG 61

Query: 63  GNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDEPNDTVAEQKFAPAGDTVAE 122
             RHGFL   EI  +Y+   L       KA   E  ++  E    V +++    G  +  
Sbjct: 62  AERHGFLPLKEISREYFTPGLDPH----KANIRELIKEGQEVVVQVEKEERGNKGAALTT 117

Query: 123 VVAQAEAAEAAGEAAEAAAEKPKAKAKPKRTRRAKPKAGEEAVAPESGPSEDG 175
            ++       AG         PKA    +R      +A +EA+   + P + G
Sbjct: 118 FIS------LAGRYMVLMPNNPKAGGVSRRIEGEDRQALKEALDHVTVPDDVG 164