Pairwise Alignments

Query, 924 a.a., ribonuclease E protein from Sinorhizobium meliloti 1021

Subject, 875 a.a., ribonuclease, Rne/Rng family from Sphingomonas koreensis DSMZ 15582

 Score =  751 bits (1940), Expect = 0.0
 Identities = 453/966 (46%), Positives = 568/966 (58%), Gaps = 141/966 (14%)

Query: 1   MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLIDA H EETRV VV+GNRIEEFDFES  +KQ++GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MTMRMLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRD-------DDEPNDTVAEQKF 113
           YGGNRHGFLAF+EIHPDYYQIP  DR ALL+ EAE A  +       DD+ +D   E   
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPKEDRDALLREEAEHAAEEAALREEADDDHDDEHDEHDG 120

Query: 114 APAGDTVAEVVAQAEAAEAAGEAAEAAAEKPKAKAKPKRTRRAKPKAGEEAVAPESGPSE 173
           A  GD         E  E  G+  E  +E                  GEE  +   G   
Sbjct: 121 AEDGD--------VEVVERPGDEDEETSE------------------GEEGASASGG--- 151

Query: 174 DGEGDKNEMAAVVDTDSISEDIDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVADRH 233
                                   RR+R     DD                 +E +  R 
Sbjct: 152 ------------------------RRRRGRKGSDDQ----------------VEALRQRR 171

Query: 234 IRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGIS 293
           +   R++Y+IQ+VI+RRQ+LLVQV KEERGNKGAALTTYLSLAGRY VLMPNTA GGGIS
Sbjct: 172 MNL-RRRYKIQDVIRRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTAHGGGIS 230

Query: 294 RKITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTL 353
           RKI++  DRKRLK I   L +P  MG I+RTAG  RTK EIKRDF+YL RLW+ +R  TL
Sbjct: 231 RKISSSADRKRLKSIMSDLKLPPTMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTL 290

Query: 354 NSTAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYR 413
            S+AP LVY +  LIKR+IRD+YN+DI E++V GEEGY+ AK FMK+LMPSHAK V+ Y 
Sbjct: 291 KSSAPALVYGDSDLIKRAIRDIYNRDIEEVIVEGEEGYRHAKDFMKLLMPSHAKKVKHYS 350

Query: 414 DVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTAL 473
           D  P+F R+ +E QL  M  P V LKSGGY++IN TEALVSID+NSGRSTREH+IE TA 
Sbjct: 351 DAVPLFQRAHVEDQLSAMYHPVVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTAT 410

Query: 474 QTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRIS 533
            TNLEA +E+ARQLRLRD+AGL+VIDFIDM+   N R VEK +K+ LKNDRARIQVGRIS
Sbjct: 411 ATNLEATQEIARQLRLRDMAGLVVIDFIDMDHGSNVRKVEKAMKEALKNDRARIQVGRIS 470

Query: 534 HFGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDIS 593
            FGL+EMSRQR+R  VLE++  TCPHC GTG +R+ SS  L  LR IE+   +     ++
Sbjct: 471 AFGLMEMSRQRLRTGVLEASTVTCPHCEGTGLVRTASSAGLSALRLIEDEAARGRGSLLT 530

Query: 594 VRTTPDIALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVRIDQI 653
           +R + + A Y+LN+KR+ I + E R+GV++ I +D  +     +++   P   P    + 
Sbjct: 531 LRCSQEAAFYVLNKKRADIAEIEDRYGVTVEILSDGELEGARMSVEASGP--PPAHAPKF 588

Query: 654 LQFEPEPEDEEEVLIEEESDEEEVEEIAAERQDPKKGQTDEQGGRKRKRRRRRRGKGAGQ 713
                E E++    I+EE DEE+VE     R+   +G+ + +G ++R+RRR RRG+   +
Sbjct: 589 AAAIEEIEEDIVEEIDEEEDEEDVEAREPRRERSDRGEGEGEGRKRRRRRRGRRGRRDDE 648

Query: 714 GADEAFADAADAAEDETGDEAAVDDAEDEVDATDALNGDSEQKRKRRRRGKRGGRRSRQD 773
             +      A+ A DE G+    +  E E  A  A   D  + RKRRRRG+RGGRR    
Sbjct: 649 HGEHGERQDAEDAADEDGEAEPEEAGEAETLAETA--ADEGETRKRRRRGRRGGRRG--- 703

Query: 774 ELAEAEGETGMAAEAGEGAGD--------DAEAEVAPA---------------AAAEETS 810
             A  EG   + AE  E AGD        +   E APA               A A E +
Sbjct: 704 --ATGEGGEAVEAEVAEPAGDVEPVAVVAEPVVEEAPAKPKRTRRKKADVEAEAPAVEAA 761

Query: 811 PDIAAAAAVEAAAEEPKPAKPRRSRKKAVKAEEPAESVDEVAEKTVEAQPEATEAAPEAV 870
           P+    AA E    E  PAKP+R R+K  KA+             VEA+  A EAAPE V
Sbjct: 762 PEPVVEAAAEPVVAEEAPAKPKRPRRK--KAD-------------VEAEAPAVEAAPEPV 806

Query: 871 EEA----VADLEGAKPARANR---------DLSAIATEPVV---TSSKGEGEEEPTKPKK 914
            EA    VA+   AKP R +R         DL   A E         + E E E  +P++
Sbjct: 807 AEAAAGPVAEEAPAKPKRRSRAKAAAPVEQDLEPTAAETAAAEPADGEPEAEGEGGEPRR 866

Query: 915 GGWWQR 920
            GWWQR
Sbjct: 867 -GWWQR 871