Pairwise Alignments

Query, 924 a.a., ribonuclease E protein from Sinorhizobium meliloti 1021

Subject, 1077 a.a., ribonuclease E from Dyella japonica UNC79MFTsu3.2

 Score =  412 bits (1058), Expect = e-119
 Identities = 257/700 (36%), Positives = 377/700 (53%), Gaps = 68/700 (9%)

Query: 243 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNLQDR 302
           I+++IK    ++VQV KEERGNKGAALTTY+SLAGRY VLMPN  + GG+SR+I   +DR
Sbjct: 89  IRDLIKEGHEVVVQVEKEERGNKGAALTTYISLAGRYMVLMPNNPKAGGVSRRIEG-EDR 147

Query: 303 KRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 362
           + LKE    L VP  +G+I+RTAG  R   E++ D +YL++LW+ +        AP L+Y
Sbjct: 148 QALKEALEHLTVPDDVGLIVRTAGMGRDAEELQWDLDYLLQLWKAISAAASAQKAPFLIY 207

Query: 363 EEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVHPIFSRS 422
           +E  L  R++RD    DI EI++  E  Y +A+ FM+ +MP+  + ++ YRD  P+FSR 
Sbjct: 208 QESKLFIRALRDYLRNDIGEILIDEEALYNDAREFMQQVMPNALRKLKLYRDDTPLFSRY 267

Query: 423 GIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLEAAEE 482
            IE Q++     QV L SGG I+I+QTEAL +ID+NS ++T+   IE+TA  TN EAA E
Sbjct: 268 QIETQIESAFDRQVRLPSGGSIVIDQTEALTAIDINSSKATKGSDIEETAFNTNCEAAVE 327

Query: 483 VARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSR 542
           +ARQLR+RD  GLIVIDFIDM+  ++ R VE++LKD LK DRAR+QVGRIS FGLLEMSR
Sbjct: 328 IARQLRIRDAGGLIVIDFIDMDSPKHQREVEERLKDALKLDRARVQVGRISRFGLLEMSR 387

Query: 543 QRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTPDIAL 602
           QR+R S+ E+T   CP C G GHIRS  S+AL  LR IEEH +K+ T  + V+  P +A 
Sbjct: 388 QRLRPSLGEATQVVCPRCEGHGHIRSVESLALSTLRLIEEHAMKDNTGQVLVQAPPAVAN 447

Query: 603 YLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDR------GEPVENPVRIDQILQF 656
           ++LN+KR+ + + E R  V + I AD  +   H  I R      GE  +       +++ 
Sbjct: 448 FMLNEKRAGVVEVELRNKVHVVIVADDQLETPHIQIQRIREAEMGEHSKPSYERRTVVEA 507

Query: 657 EPEPEDEEEVLIEEESD------------EEEVEEIAAERQDP----------------- 687
            P P+  + +   E+               EE  +     Q P                 
Sbjct: 508 APIPKMGQALGSGEQPAVSGIVPASPAPVREETAQAPVAAQQPTQPAARPAAAPVPSGGL 567

Query: 688 -------------------KKGQTDEQGGRKRKRRRRRRGKGAGQGADEAFADAADAAED 728
                               + +     G  R +RR  RG+G  Q   +         E 
Sbjct: 568 ISRFLGWFRSTPAPAPAPVARREAAPSAGGGRNQRRDERGRGQPQNRQQ--QQPQQRREP 625

Query: 729 ETGDEAAVDDAEDEVDATDALNGDSEQ--KRKRRRRGKRGGRRSRQDELAEAEGETGMAA 786
           + G +      +++  A     G+ ++  ++++R+ GK+  ++ RQ +   AE +     
Sbjct: 626 QQGKQG---QGQNQGQAQQQGKGNRQRGNEQQQRQPGKQEQQQPRQQQPKAAEAQ----V 678

Query: 787 EAGEGAGDDAEAEVAPAAAAEETSPDIAAAAAVEAAAEEPKPAKPRRSRKKAVKAEEP-A 845
           E  +      + +  PA    +       AA   AA ++P  A+P    + A +A  P A
Sbjct: 679 ERKQPQQQPRQEQAKPAQPQAQEPRQPRPAAQQPAAVQQPVAAQPFMPPQPAAQAPRPVA 738

Query: 846 ESVDEVA-EKTVEAQPEATEAAPEAVEEAVADLEGAKPAR 884
              DE A E  + A+P     AP+A++ A A+ EG++P R
Sbjct: 739 APADEAAQEAALVAKPVTDAVAPDALDPAAAEAEGSQPRR 778



 Score = 80.9 bits (198), Expect = 4e-19
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 10/173 (5%)

Query: 3   EKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62
           ++MLI+A+  EE RV +V G  + + D E   ++Q + NIY  ++TRVEPSL+A FV+YG
Sbjct: 2   KRMLINATQREELRVAIVDGQTLYDLDIEIPSREQKKANIYKGRITRVEPSLEACFVEYG 61

Query: 63  GNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDEPNDTVAEQKFAPAGDTVAE 122
             RHGFL   EI  +Y+   L   +A ++   +E        ++ V + +    G+  A 
Sbjct: 62  AERHGFLPLKEIAREYFTPGLDPNKANIRDLIKEG-------HEVVVQVEKEERGNKGA- 113

Query: 123 VVAQAEAAEAAGEAAEAAAEKPKAKAKPKRTRRAKPKAGEEAVAPESGPSEDG 175
             A       AG         PKA    +R      +A +EA+   + P + G
Sbjct: 114 --ALTTYISLAGRYMVLMPNNPKAGGVSRRIEGEDRQALKEALEHLTVPDDVG 164



 Score = 59.7 bits (143), Expect = 1e-12
 Identities = 87/346 (25%), Positives = 131/346 (37%), Gaps = 78/346 (22%)

Query: 646 NPVRIDQILQFEPEPEDEEEVLIEEESDEEEVEEIAAERQDPKKGQT---DEQGGRKRKR 702
           N  R ++  Q +P  +++++   ++    E   E    +Q P++ Q      Q    R+ 
Sbjct: 646 NRQRGNEQQQRQPGKQEQQQPRQQQPKAAEAQVERKQPQQQPRQEQAKPAQPQAQEPRQP 705

Query: 703 RRRRRGKGAGQG--ADEAFADAADAAEDETGDEAAVDDAEDEV-------------DATD 747
           R   +   A Q   A + F     AA+      A  D+A  E              DA D
Sbjct: 706 RPAAQQPAAVQQPVAAQPFMPPQPAAQAPRPVAAPADEAAQEAALVAKPVTDAVAPDALD 765

Query: 748 ALNGDSEQKRKRRRRGKRGGRRSRQDELA--------EAEGETGMAAEAGE--GAGDDAE 797
               ++E  + RRRRG+RGGRR R+ E A        + + E  +  E  E  G G+ A+
Sbjct: 766 PAAAEAEGSQPRRRRGRRGGRRRRRHEDAGQPGASEGQLDNEFDLDDEDREEDGTGETAK 825

Query: 798 AE------VAPAAAAEETSPDIAAAAAVEAAAEEPKPAKPRRSRKKAVKAEEPA------ 845
           AE       APA AA   +  + AA ++EA A    PA  R      V+   PA      
Sbjct: 826 AEPRPATSAAPAVAAAAAATAVIAADSIEAEAANHAPAAERELELPVVETPAPAPASFNL 885

Query: 846 -------------ESVDEVAEKTV------EAQPEATE--AAPEAVEEA----------- 873
                        E+ +  AE  V      EA P   +  A P AV E+           
Sbjct: 886 PALPPLPAKTDEPEAAEAPAEPVVAHVPAMEAAPVVADVSAPPAAVAESEVRVTAPVATP 945

Query: 874 ------VADLEGAKPARANRDLSAIATEPVVTSSKGEGEEEPTKPK 913
                 VA+   A+P  A     A   EP+V ++K E   E  + +
Sbjct: 946 EPAPLLVAEAVVAEPVVAAPAAEAAPVEPMVETAKLEPAVEAVEAR 991