Pairwise Alignments

Query, 487 a.a., DNA repair protein RadA from Sinorhizobium meliloti 1021

Subject, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  376 bits (965), Expect = e-108
 Identities = 198/432 (45%), Positives = 277/432 (64%), Gaps = 5/432 (1%)

Query: 21  MAKARTQFVCQNCGTVHSRWVGKCDGCGEWNTIIEDNPTAGIGGGPMRTPK---KGRPVA 77
           MAK +T +VC  CG    RW G+C  C EWNTI E    A   G   +       G    
Sbjct: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASPGRGTKFAGYAGAGSSEV 60

Query: 78  LTTLSGEIEDAPRIQTGISELDRVTGGGFVRGSALLVGGDPGIGKSTVLMQAAAALARRK 137
            T    ++   PRI +   ELDRV GGG V GSA+L+GG PG GKST+L+Q    LA + 
Sbjct: 61  KTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQM 120

Query: 138 HRVIYVSGEEAIAQVRLRAQRLGAADSDVLLAAETNVEDILATLSEGKRPDLVIIDSIQT 197
              +YV+GEE++ QV +RA RLG   + + + +ET+VE I   ++  + P ++++DSIQ 
Sbjct: 121 P-ALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQI-CEIALQESPKVIVVDSIQV 178

Query: 198 LWSDIVDSAPGTVTQVRTGVQAMIRFAKQTGTAVVLVGHVTKEGQIAGPRVVEHMVDAVL 257
           +    V S+PG+V+QVR     + RFAKQ G AV++VGHVTK+G +AGP+V+EH +D  +
Sbjct: 179 MHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDCSV 238

Query: 258 YFEGDRGHHYRILRTVKNRFGPTDEIGVFEMSDKGLREVANPSELFLGERNAKSPGAAVF 317
            FEGD    YR LR+ KNRFG  +E+GVF M+++GL+EVANPS +FL     +S G+ V 
Sbjct: 239 MFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLVM 298

Query: 318 AGMEGTRPVLVEVQALVAPTSLGTPRRAVVGWDSARLSMILAVLEAHCGIRLGQHDVYLN 377
              EGTRP+LVE+Q LV  +++  PRR  VG D+ RL+M+LAV+  H G+++   DV++N
Sbjct: 299 VVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVN 358

Query: 378 VAGGYRISEPAADLAVASALVSSLAGLALPPDCVYFGEVSLSGAVRPVAHTAQRLKEAEK 437
           V GG +++E +ADL +  A+VSS  G  LP D V FGEV LSG +RPV +  +RL EA K
Sbjct: 359 VVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAAK 418

Query: 438 LGFSQAVLPSAS 449
            GF +A++P A+
Sbjct: 419 HGFKRAIVPRAN 430