Pairwise Alignments

Query, 499 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  320 bits (821), Expect = 6e-92
 Identities = 197/501 (39%), Positives = 284/501 (56%), Gaps = 28/501 (5%)

Query: 3   NFADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62
           +F+ LGLS  +  AV++ GY  P+PIQ  AIP  L  +D++  AQTGTGKTA F LP+L 
Sbjct: 2   SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61

Query: 63  LLEKG-RARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLE 121
           LL KG +A++   R L+L PTRELAAQV E+ + YGK   L  A++ GGV  + Q  KL 
Sbjct: 62  LLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLR 121

Query: 122 RGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQT 181
            G DVL+ TPGRLLD  ++  +    +EILV+DEADRMLDMGFI DI++I  L+P  RQ 
Sbjct: 122 HGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQN 181

Query: 182 LFFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLRELIR 241
           L FSAT   EI++LA   + +P  + V  R++ A TV Q ++    K  +K A+L +LI+
Sbjct: 182 LMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQ-WICPVDKT-QKSALLIQLIK 239

Query: 242 SQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLV 301
            QE+ +  ++F   K     L +SL +   S  A+HG+  Q +R   LA+FK G +++LV
Sbjct: 240 -QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLV 298

Query: 302 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSDAI 361
           A+D+AARGLDI  +  V NFD+P   EDYVHRIGRTGRAG +G A ++V+  E K    I
Sbjct: 299 ATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDI 358

Query: 362 EKLIG-----QKVEWFNGDLSELPEPM---ESHDSRRDRGSDGRKDRKRERPGKVHADRK 413
           E+LI      Q+VE F+  +  LPE     +  D++    ++ RK R   +P       +
Sbjct: 359 ERLINRVLERQEVEGFS-PVHALPETTLNPQGKDTKVKAVANHRKHRSAGKPAPRSGSGR 417

Query: 414 PVTASGNNTEELETVPERVD------AVKIERNADSKDRHNGRSDRPGRAQNAAND---- 463
               +  N++   +   R           + R+   K +H  R      +  A N+    
Sbjct: 418 DTQGNRENSQRQNSASSRNSNEHNNTEAAVARSPKPKSKHPQRDGGTANSATAGNNAKAK 477

Query: 464 -----DNRDRRQRNRRDHDDG 479
                  R   +R+ + ++DG
Sbjct: 478 PHSGAQQRSHAERSEKSNNDG 498