Pairwise Alignments

Query, 562 a.a., cytochrome C oxidase polypeptide I transmembrane protein from Sinorhizobium meliloti 1021

Subject, 530 a.a., cytochrome c oxidase, subunit I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  593 bits (1529), Expect = e-174
 Identities = 289/544 (53%), Positives = 368/544 (67%), Gaps = 25/544 (4%)

Query: 19  HADHAHKPLTFFQRWFLSTNHKDIGTLYLIFAIIAGIIGGTLSVFMRAELQEPGIQIFHG 78
           H +H H       RW L+TNHKDIGTLYL F+ I  + GG +++ +RAEL +PG+Q+   
Sbjct: 12  HDEHHHGAPKGIMRWILTTNHKDIGTLYLWFSFIMFLTGGAMAMVIRAELFQPGLQLVE- 70

Query: 79  LAQMVYGFEGDAAIDGGKHMFNVFTTAHALIMIFFMVMPALIGGFANWMVPIMIGAPDMA 138
                             + FN  TT H LIM+F  VMPA  G  ANW++P+MIGAPDMA
Sbjct: 71  -----------------PNFFNQMTTVHGLIMVFGAVMPAFTG-LANWLIPMMIGAPDMA 112

Query: 139 FPRMNNISFWLIVPAFLLVLLSMFVEGPAGAYGAGGGWTIYPPFSTSGMPGPAMDLAILG 198
            PRMNN SFW++  AF ++L S+F+EG     G   GWT Y P ST+  P     L +  
Sbjct: 113 LPRMNNWSFWILPFAFTILLSSLFMEGG----GPNFGWTFYAPLSTTYSPDSTA-LFVFS 167

Query: 199 LHIAGASSILGAINFITTILNMRAPGMTLHKMPLFAWSVLITAFLLLLSLPVLAGAITML 258
           +HI G SSI+GAIN I TI+N+RAPGMT  K+PLF W+ LITAFLL+  +PVLAGA+TM+
Sbjct: 168 IHIMGISSIMGAINVIVTIVNLRAPGMTWMKLPLFVWTWLITAFLLIAVMPVLAGAVTMV 227

Query: 259 LTDRNFGTTFFAPEGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISTFSRKPIFGY 318
           LTD+ FGT+FF   GGGDP++FQH+FWFFGHPEVYI+ILP FGI+S I+  FSRKP+FGY
Sbjct: 228 LTDKFFGTSFFEAAGGGDPVMFQHIFWFFGHPEVYIMILPSFGIISAIVPAFSRKPLFGY 287

Query: 319 LGMAYAMVAIGAVGFIVWAHHMYTVGMSLQTQRYFVFATMVIAVPTGVKIFSWIATMWGG 378
             M YA  +I  + F+VWAHHM+T GM +  + +F++ TM+IAVPTGVK+F+W+ATMW G
Sbjct: 288 ASMVYATASIAILSFLVWAHHMFTTGMPVFAELFFMYCTMLIAVPTGVKVFNWVATMWRG 347

Query: 379 SIRFATPMVWAIGFIFLFTVGGVTGVQLANAGLDRALHDTYYVVAHFHYVLSLGAVFAIF 438
           S+ F TPM++A+ FI LFT+GG +G+ LA    D   HDTY+VVAHFHYVL  GA+F+I 
Sbjct: 348 SLSFETPMLFAVAFIILFTIGGFSGLMLAITPADFQYHDTYFVVAHFHYVLVTGAIFSIM 407

Query: 439 AAWYYWFPKMTGYMYSEFLGKLHFWVMFVGVNLIFFPQHFLGLAGMPRRYIDYPDAFAGW 498
           AA YYW PK TG+MYSE LG+ HFW   + VN++FFP HFLGLAGMPRR  DY   FA  
Sbjct: 408 AAAYYWLPKWTGHMYSERLGQWHFWCSVISVNVLFFPMHFLGLAGMPRRIPDYSIQFADV 467

Query: 499 NMVSSYGSYIAAVGVLIFLFCVAEAFAKKRVAGDNPWGEGANTLEWQLSSPPPFHQWEQL 558
           N + S G +   +  LIFL  V +       A   PW EG+  LEW L SP P+H +   
Sbjct: 468 NQIVSIGGFAFGLSQLIFLVLVIKCIRGGEKAPAKPW-EGSEGLEWTLPSPAPYHSFTTP 526

Query: 559 PRIK 562
           P +K
Sbjct: 527 PEVK 530