Pairwise Alignments

Query, 314 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 308 a.a., Uncharacterized ABC-type transport system, permease component from Pseudomonas stutzeri RCH2

 Score =  208 bits (530), Expect = 1e-58
 Identities = 123/319 (38%), Positives = 186/319 (58%), Gaps = 21/319 (6%)

Query: 1   MNAVTDIFASAGLWAAVLRIATPLILGTLGALLCERSGVLNLGIEGIMTFGAMIGWLAVY 60
           M+ +T+IF       A++R  TPL+L  LG L+CE+SGVLNLG EG+M FGA+IG++  +
Sbjct: 3   MDLLTNIFY------AMIRTGTPLLLVALGELVCEKSGVLNLGQEGMMLFGAVIGFIVAF 56

Query: 61  NGADLWTGILVAGLSGGIFGLLHAGLTVTLGLSQHVSGLGVTLFASSFSYYVFRLLV--P 118
              +LW G+L A L+G +  LL A + +    +Q  +GL +T+F    S +V    V  P
Sbjct: 57  ASGNLWLGVLFACLAGVLLSLLFAMVALGFNANQVATGLALTIFGVGLSSFVGASWVGKP 116

Query: 119 VAGTPPTIEPFQPIDVPALSSLPFLGPALFTQTPPTYVAILLALVLGYVLFRTPLGLAIR 178
           +AG       F+PI +P LS +P +G  LF Q    Y++  L  ++ +VL ++ +GL I+
Sbjct: 117 LAG-------FEPIAIPLLSEIPVIGRMLFAQDLLVYLSFGLFALVAWVLLKSRIGLIIQ 169

Query: 179 MTGENPHAAEAQGINPMAIRFGSVIVGSALMGIGGAFLTLSAFNSFFPTMVQGRGWICIA 238
             GENP+AA A G+  + +R  +V+ G A+ G+ G +++L+    +   M  GRGWI +A
Sbjct: 170 AVGENPNAASAMGLPVLRVRTLAVMFGGAMAGLAGGYMSLAYTPMWAENMTAGRGWIALA 229

Query: 239 LVVFASWRPGRALVGALLFALFDGFQLRLQTRLSGVVPYQIFLMIPYLLSIAALALMAR- 297
           LVVFASWR  R L+GA LF L     L  Q  L   +P  +  M+PY+ +I  L L++R 
Sbjct: 230 LVVFASWRVSRVLLGAYLFGLASILHLVAQ-GLGLAIPGNLLAMLPYVATILVLVLLSRD 288

Query: 298 ----RARVPQALMQPYRRG 312
               R   P +L QP++ G
Sbjct: 289 AIRTRLYAPVSLGQPWQPG 307