Pairwise Alignments

Query, 369 a.a., DNA polymerase IV from Sinorhizobium meliloti 1021

Subject, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

 Score =  252 bits (644), Expect = 1e-71
 Identities = 154/343 (44%), Positives = 210/343 (61%), Gaps = 12/343 (3%)

Query: 15  RVRKIIHIDMDAFYASVEQRDNPELRGKPVAVG-YPEARGVVAAASYEARKFGVHSAMPS 73
           R+RKIIH+DMD F+A+VE RDNP  R   +AVG + + RGV++  +Y+ARKFGV SAMP+
Sbjct: 4   RIRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPT 63

Query: 74  VTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGLKLA 133
             A + CP+L  VP R  VY++VS+QIQ IF  YT L+EPLSLDEAYLDV+E+      A
Sbjct: 64  AQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSA 123

Query: 134 TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGPDFVQALPVK 193
           T IA+ IR  I  E +LTASAGV+  KFLAK+ASD  KPDGL+V+TP    + V +LP++
Sbjct: 124 TLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLE 183

Query: 194 KFHGVGPATAEKMKRLGIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDERKVKPDRI 253
           K  GVG    EK+ + G+  GAD++  D   L   FG+ G   +  + GIDER+V  +R 
Sbjct: 184 KIPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERE 243

Query: 254 RKSIGAEDTFREDVHDL----ETARAGLKPLIDKVWHYCEASGIRG-KTMTLKVKWADFT 308
           RKS+G E TF +++       +     L P +D       A   RG     +KVK+ADF 
Sbjct: 244 RKSVGVEYTFSQNISTFQECWQVIEQKLYPELDA--RLSRAHPQRGIIKQGIKVKFADFQ 301

Query: 309 QITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTL 351
           Q T     V P   +    E+ E +L+      + IRLLG+++
Sbjct: 302 QTTIEH--VHPALELDYFHELLEQVLTR--QQGREIRLLGLSV 340