Pairwise Alignments

Query, 369 a.a., DNA polymerase IV from Sinorhizobium meliloti 1021

Subject, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  257 bits (656), Expect = 4e-73
 Identities = 160/362 (44%), Positives = 221/362 (61%), Gaps = 13/362 (3%)

Query: 16  VRKIIHIDMDAFYASVEQRDNPELRGKPVAVGYP-EARGVVAAASYEARKFGVHSAMPSV 74
           +RKIIH+DMD ++A+VE RD PE RGKP+AVG   E RGV++  +YEAR+FGV SAM + 
Sbjct: 1   MRKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATA 60

Query: 75  TAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGLKLAT 134
            A++ CP+LI VP R  VY+ VS QI+AIF+ YT L+EPLSLDEAYLDV++       AT
Sbjct: 61  YAQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSAT 120

Query: 135 EIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGPDFVQALPVKK 194
            IAE IR  I AET LTASAGV+  KFLAK+ASD  KP+G +VI P   P+F++ L +++
Sbjct: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180

Query: 195 FHGVGPATAEKMKRLGIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDERKVKPDRIR 254
             GVG  TAEK+  LG+ T  D+++     L   FGK G      A+GID+R +   R R
Sbjct: 181 IPGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRER 240

Query: 255 KSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGK--TMTLKVKWADFTQITR 312
           KS+G E T  +D++ LE  +  +  LI ++      S    +     +K+K++DF Q   
Sbjct: 241 KSVGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQ--- 297

Query: 313 SKTIVAPIASVAEMSEIAELLLSPIFPAP-KGIRLLGVTL----SSLDTVDDRSEPQLAL 367
             T +   ++   +    ELL   I     +GIRLLGV +     SL +  D  + QL L
Sbjct: 298 --TTIEHRSNDVSVMMFYELLAQAIARQDGRGIRLLGVAVGLSDKSLISEVDPLQTQLVL 355

Query: 368 AL 369
           ++
Sbjct: 356 SI 357