Pairwise Alignments

Query, 369 a.a., DNA polymerase IV from Sinorhizobium meliloti 1021

Subject, 353 a.a., DNA damage-inducible protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  333 bits (854), Expect = 4e-96
 Identities = 179/330 (54%), Positives = 229/330 (69%)

Query: 24  MDAFYASVEQRDNPELRGKPVAVGYPEARGVVAAASYEARKFGVHSAMPSVTAKRKCPEL 83
           MDAFYASVEQRD+PELRGKP+AVG+ E RGVVAAASYEAR++GV SAM S  AKR CP+L
Sbjct: 1   MDAFYASVEQRDHPELRGKPLAVGHAEERGVVAAASYEARRYGVRSAMSSQKAKRLCPQL 60

Query: 84  IFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGLKLATEIAEEIRGR 143
           IFV  R DVY++VSRQI  IF EYT ++EPLSLDEA+LDVTEN +G+ LA +IA+EI+ R
Sbjct: 61  IFVSGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTENKKGISLAVDIAKEIKLR 120

Query: 144 IRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGPDFVQALPVKKFHGVGPATA 203
           IR + +L ASAGVSYNKFLAK+ASD RKPDGL  I P    DF+  LP++ F GVGP TA
Sbjct: 121 IREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALDFIAGLPIESFWGVGPVTA 180

Query: 204 EKMKRLGIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDERKVKPDRIRKSIGAEDTF 263
           +KM  LGI  G  L+   L  L  HFGK G  +Y  +RGIDER V+  RIRKSIG E T 
Sbjct: 181 KKMHLLGIHNGLQLRKCSLEMLTAHFGKVGALYYECSRGIDERPVEAVRIRKSIGCERTL 240

Query: 264 REDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWADFTQITRSKTIVAPIASV 323
             D+    +    L  +  ++    +    +G T+TLK+K+ DF+QITRS T    + ++
Sbjct: 241 ERDISVHSSVIIELYHVAVELIERLQRKEFKGNTLTLKIKFHDFSQITRSITQSQELYTL 300

Query: 324 AEMSEIAELLLSPIFPAPKGIRLLGVTLSS 353
             +  +A+ LL  +      IRL+G+++S+
Sbjct: 301 DRILPLAKELLKSVEYEQHPIRLIGLSVSN 330