Pairwise Alignments

Query, 294 a.a., beta lactamase transcriptional activator from Sinorhizobium meliloti 1021

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  181 bits (460), Expect = 1e-50
 Identities = 107/290 (36%), Positives = 160/290 (55%), Gaps = 5/290 (1%)

Query: 7   PLNALRAFEASARHCSFTRAGLELRVSQTAISHQVKSLEDLLGVKLFRRLPRGLALTDEG 66
           PLNA++AFEA+ARH SFTRA  EL V+Q A+SHQ+K+LE+ LG+KLFRR  R L LT+EG
Sbjct: 7   PLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLLTEEG 66

Query: 67  SALAPVMSDVFKRMCATLSRFEEGNFHEVVTVGVVGTFAIGWLMERLPDFHDAHPSLDLR 126
                 + D+F ++     R    +    +TV    +FAI WL+ RL +F + +P +D+R
Sbjct: 67  QGYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENNPDIDVR 126

Query: 127 ILSNNNRVDLAGDGLDFAIRFGDGSWHGTDAMHLSAAQLSPVCSPQIAA---RLKEPVDL 183
           I + ++      D +D AI +G G+W G  A  L    L PVCSP + +    L +P DL
Sbjct: 127 IKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPKPLSQPSDL 186

Query: 184 ARIELLRSYRSDEWAQWFRAAGAQP-PILRGMVFDTSLALAEAAARGSGAALLPITMFEH 242
               LL      +W  WFR  G     + +G +F  S  + +AAA G G AL    +   
Sbjct: 187 KHHTLLHDSSRHDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALGYSVLARP 246

Query: 243 YLESGRLVQPF-DITISAGDYWLTWLKSRQFTRGMIAFKSWLKQQLPDPS 291
            +++GRLV PF ++ +S   Y+L   ++      ++AF+ W+     + S
Sbjct: 247 DIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWMLDMFEEES 296