Pairwise Alignments

Query, 264 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (288), Expect = 9e-31
 Identities = 71/249 (28%), Positives = 127/249 (51%), Gaps = 4/249 (1%)

Query: 12  RLVTFSMMA----FLIFPIAVTLIVAVNPREFVLPPNGFTLDWFRAAWSSKTFLRGMGVS 67
           R + FS M+    FL  PI V +  + N  +F +   GFT  W+ A  ++ + ++    S
Sbjct: 3   RSIRFSFMSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHS 62

Query: 68  LVLGLAAALIANALALPAAIALARTNFPGKGAINLILMTPLLIPTTILSLALYIYFVRVG 127
           + + + +A  A  +    A+AL R  F GK  ++ +L   ++ P  +++++L   F+ +G
Sbjct: 63  INVAVFSATAATLIGSLTAVALFRYQFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMG 122

Query: 128 YGSGLVPLLVGHAIHIMPYAVRILTASLLNFDPSYEEAARNVGAGRIRTLFSVTLPVIRT 187
              G   LL+ H    +P+ V  +   L  FD    EAA+++GAG    L  + LP+ + 
Sbjct: 123 AKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKP 182

Query: 188 GLISSLTLCFILSWNDFPISVFLAPPSWTPLPVELYSYIKFQYDAVAAALASSLILLSAV 247
            + +   L F LS +D  IS F+  P++  LP+++YS +K        ALA+ ++++S V
Sbjct: 183 AVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVMLVVSLV 242

Query: 248 AMVVIDRLA 256
            +V    LA
Sbjct: 243 LVVASQLLA 251