Pairwise Alignments

Query, 409 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 73.6 bits (179), Expect = 7e-18
 Identities = 76/296 (25%), Positives = 132/296 (44%), Gaps = 26/296 (8%)

Query: 118 LLDDYQSWLRVHRGLAERTIARHLRHLHKLLPELGTP--TLDYDAALIRNVVREW--RER 173
           L++ +   +   RGLAE T+A +   L KLL  +      LD+ +       + W   + 
Sbjct: 11  LVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70

Query: 174 TGPADLRTITSALRSYLRFL--AGVGLCRPNLDHAIPPVLQWRLSSLPRYLAAADVERVI 231
             P     + SA+R   ++L    V    P+    + P L  R   LP+ L+ A VE ++
Sbjct: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSA-LLVSPKLPTR---LPKDLSEAQVEALL 126

Query: 232 ASCDQLTRGRLRDRAILLLLARLGLRAGDVAGLRLSDIEWTSGMLRLSGKARRQVRLPLP 291
           ++ D  +   LRD+A+L LL   GLR  ++  L + ++    G++R+ GK  ++  +P+ 
Sbjct: 127 SAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMG 186

Query: 292 QDVGDALLAYIEQERPRMHQEAVFLTMIAPYRS--------FAQSSHVSTIVALALKRAG 343
           ++  + +  +++Q R  +  E     +    R         + +  H + I       AG
Sbjct: 187 ENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVI-------AG 239

Query: 344 ISDPPSTGACLLRHSAATSMLRSGATLEAVGTVLRHRSLDMTAHYAKVDAAMLEQV 399
           I D       +LRH+ AT +L  GA L  V  +L H  L  T  Y  V    L+Q+
Sbjct: 240 I-DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQL 294