Pairwise Alignments

Query, 304 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 23/240 (9%)

Query: 57  PEQRRNRLLTVRRFALSLHAEDPRHEVPSADLFGRASRKRRTPYIYSPEEIRRLIDAARR 116
           P  +   L  +RR    LH E  R + PSA L        R P   S  ++  L+ A   
Sbjct: 73  PTSKARMLSAIRRLFQYLHREKVRADDPSA-LLVSPKLPTRLPKDLSEAQVEALLSA--- 128

Query: 117 LGPD-DSIRSLTYATMFGLIAATGMRVSEAIAIRLHDVT-DDGLIIAQTKFKKSRLLPLH 174
             PD  S   L    M  L+ ATG+RV+E +++ + +++   G++    K  K RL+P+ 
Sbjct: 129 --PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMG 186

Query: 175 TTTRRALDGYL---ATRLKAASQSDALFISHQGTPLAYPTVITVFLQIIRSIGLRGAPGS 231
                 ++ +L    + L     SD +F S +G  +   T    F   I+   +      
Sbjct: 187 ENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQT----FWHRIKHYAVIAGIDV 242

Query: 232 RGPRIHDLRHTFAVRSLEHCAHDSQAVARHITALSTYLGHAHVTDTYWYLQSTPELMAHM 291
                H LRH FA   L + A         +  +   LGH+ ++ T  Y     E +  +
Sbjct: 243 EKLSPHVLRHAFATHLLNYGA--------DLRVVQMLLGHSDLSTTQIYTHVATERLKQL 294