Pairwise Alignments

Query, 329 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  120 bits (302), Expect = 3e-32
 Identities = 82/234 (35%), Positives = 129/234 (55%), Gaps = 17/234 (7%)

Query: 76  KARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTEVQALLNA 135
           K  S+   L+A++  F+YL HR     D    +   P  K+   L   LS  +V+ALL+A
Sbjct: 72  KPTSKARMLSAIRRLFQYL-HREKVRADDPSALLVSP--KLPTRLPKDLSEAQVEALLSA 128

Query: 136 PDRRSLSGIRDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPASIHIIGKGRRERVLPL-- 193
           PD +S   +RD+AML L +A GLRV+ELV LT++    R    + ++GKG +ER++P+  
Sbjct: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQ-GVVRVMGKGGKERLVPMGE 187

Query: 194 ----WQETAAAIRAWIAVRPKNGDTALFLNNAGRMMTRSGFEYILEKHAAAAVSVAPTLA 249
               W ET       + +  +  D  +F ++ G+ MTR  F + ++ +A  A      + 
Sbjct: 188 NAIEWIETFLQQGRSLLLGEQTSD-IVFPSSRGQQMTRQTFWHRIKHYAVIA-----GID 241

Query: 250 TKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEKLEML 303
            + +SPHVLRH+ A H+L    D+R V + LGH+ L +T+IY     TE+L+ L
Sbjct: 242 VEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHV-ATERLKQL 294