Pairwise Alignments

Query, 329 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 330 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score = 97.4 bits (241), Expect = 4e-25
 Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 17/285 (5%)

Query: 16  LPRERRASVHTCDAYAYSFQLLVTFAARRLSKRPCLLQIEDIDVPMILAFLEHIEETRGN 75
           L  ERRAS HT DAY       +TF      + P L  +  +      A++     T+G 
Sbjct: 42  LQGERRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADFRAYMA-ARLTQGL 100

Query: 76  KARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTE-VQALLN 134
              S    L+ +++ FR+L+ R   + + A+     P +   +A+  +LS +E + AL  
Sbjct: 101 SRPSMARALSTLRNLFRWLD-REGVLRNGAIATIRSPRQP--QAVPKALSESEALDALSV 157

Query: 135 APDRRSLSGI--RDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPASIHIIGKGRRERVLP 192
           A D +    +  RD A+  L +  GLR+ E   L LD+ D  S   + I GKGR+ER++P
Sbjct: 158 ASDLQDDPWLAKRDLALFTLLYGCGLRLGE--ALDLDRGDLPSGEVMRITGKGRKERLVP 215

Query: 193 LWQETAAAIRAWIAVRPKNG--DTALFLNNAGRMMTRSGFEYILEKHAAAAVSVAPTLAT 250
           L      A+  ++A  P  G  D  LFL + G+ +     +  + +         P  AT
Sbjct: 216 LLPVVVEALADYLAACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRR--LRGFLGLPETAT 273

Query: 251 KSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRAD 295
               PH LRHS A H+L    D+R +   LGHASL +T+ Y + D
Sbjct: 274 ----PHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVD 314