Pairwise Alignments

Query, 329 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 337 a.a., tyrosine recombinase XerD from Phaeobacter inhibens DSM 17395

 Score = 98.2 bits (243), Expect = 3e-25
 Identities = 80/256 (31%), Positives = 125/256 (48%), Gaps = 23/256 (8%)

Query: 71  ETRGNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTEVQ 130
           +  G    +R  RL+A+K  +R+         + A+++     +K   AL  +L   EV 
Sbjct: 74  DAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQK---ALPKTLEVIEVD 130

Query: 131 ALLNAPDR--RSLSG-IRDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPASIHIIGKGRR 187
            LL+A  +  R+LS  +R+  M+ L +A G+RVSELVGL +    G  P  + ++GKG +
Sbjct: 131 RLLDAARQSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARG-DPRMLLVLGKGGK 189

Query: 188 ERVLPLWQETAAAIRAWIAVRPKNGDTALFLNNAGRM-----------MTRSGFEYILEK 236
           ER++PL      A+ AW+  R    + A+    A              +TR  F Y+L K
Sbjct: 190 ERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHRF-YLLIK 248

Query: 237 HAAAAVSVAPTLATKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADP 296
             A A  + P    +++SPH LRH+ A H+L    D+R +   LGHA + +TEIY     
Sbjct: 249 EFAVAGGLPP----EAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLD 304

Query: 297 TEKLEMLDALAPLGIK 312
               E++    PL  K
Sbjct: 305 ARLSELVLEHHPLARK 320



 Score = 24.6 bits (52), Expect = 0.004
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)

Query: 266 MLQATRDIRKVALWLGH-------ASLQSTEIYLRADPTEKL 300
           +L   RD++ VA WLGH       A+    E YL A   E L
Sbjct: 37  LLAYGRDLKDVASWLGHKNRAFGSATRDDIESYLIACDAEGL 78