Pairwise Alignments

Query, 329 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score =  121 bits (303), Expect = 3e-32
 Identities = 86/245 (35%), Positives = 132/245 (53%), Gaps = 26/245 (10%)

Query: 77  ARSRNARL-AAVKSFFRYLEHRVPAVLDQALRVHAMPM---KKIDEALVASLSRTEVQAL 132
           A++ +ARL ++++ F++YL      +  + + V  M M    K+   L  +LS  +V  L
Sbjct: 74  AKTSSARLLSSLRRFYKYL------LAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRL 127

Query: 133 LNAPDRRSLSGIRDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPASIHIIGKGRRERVLP 192
           L+ P+R      RDRAML L +A GLRVSELVGLTLDQ   R    + I+GKG +ER++P
Sbjct: 128 LSEPNREDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQ-GVVRIVGKGSKERLVP 186

Query: 193 LWQETAAAIRAWI------AVRPKNGDTALFLNNAGRMMTRSGFEYILEKHA-AAAVSVA 245
             ++  A I  ++       ++ K  D  +F +  G MMTR  F + ++ +A  A ++V 
Sbjct: 187 FGEQAGAEIEDYLKAARFELLKGKASD-VVFPSKRGNMMTRQTFWHRIKLYAQRAGIAV- 244

Query: 246 PTLATKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEKLEMLDA 305
                  +SPH LRH+ A H+L    D+R V L LGH+ L +T+IY         ++  A
Sbjct: 245 ------HLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQA 298

Query: 306 LAPLG 310
             P G
Sbjct: 299 HHPRG 303