Pairwise Alignments

Query, 329 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

Subject, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 84/298 (28%), Positives = 137/298 (45%), Gaps = 25/298 (8%)

Query: 15  HLPRERRASVHTCDAYAYSFQLLVTFAARRLSKRPCLLQIEDIDVPMILAFLEHIEETRG 74
           ++  ER+ S HT   Y Y  Q         L +   LL +       +LA L      +G
Sbjct: 15  YMQSERQLSAHTVRNYLYELQR----GRELLPEGIDLLNVGREHWQQVLAKLHR----KG 66

Query: 75  NKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTEVQALLN 134
              RS +  L+AVK +  +L       L+ A  + A    K    L  ++    +  LL 
Sbjct: 67  LSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAK---PLPKNIDVDSLTHLLE 123

Query: 135 APDRRSLSGIRDRAMLHLAFAGGLRVSELVGLTLD--QFDGRSPASIHIIGKGRRERVLP 192
                 L+ +RD+A++ L ++ GLR++EL  L L   Q+D R    + ++GKG +ER++P
Sbjct: 124 IDGNDPLT-LRDKAIMELFYSSGLRLAELAALDLSSVQYDQRE---VRVLGKGNKERIVP 179

Query: 193 LWQETAAAIRAWIAVRPKNG--DTALFLNNAGRMMTRSGFEYILEKHAAAAVSVAPTLAT 250
           + +    AI AW+  R +    D ALF+   G+ ++    +  + K             +
Sbjct: 180 VGRYAIDAISAWLECRRQIPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQA------LS 233

Query: 251 KSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEKLEMLDALAP 308
             + PH LRHS A HML+++ D+R V   LGH +L +T+IY   D     ++ D   P
Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHP 291