Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  191 bits (486), Expect = 2e-53
 Identities = 105/316 (33%), Positives = 182/316 (57%), Gaps = 17/316 (5%)

Query: 11  LRRTLLQAVPTILGIVILNFFLLQLAPGDAADVLAGEAGSATEESVAALRARFGLDSPVL 70
           + + + +A+PT+L ++ ++FFL++ APG+              E +A + A++GLD PV 
Sbjct: 5   IAKRIFEAIPTMLVLITISFFLMRYAPGNPFS----SERPLPPEVMANINAKYGLDKPVS 60

Query: 71  EQLATYLGNLAQFSLGFSPRY-GMPVADLIAQRLPGTLTLMAVALFIAILLGVVLGSLMA 129
           EQ  TYL N+ Q   G S +Y    V +LIA  LP ++ +   A    +++GV +G++ A
Sbjct: 61  EQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAA 120

Query: 130 SFAGRIPDRLLSIFSLLFYSIPSFWIGLMLIVLFSVKLGWLPSGGAATIGSQLKGFPALL 189
                  D  +   ++L   +PSF +  +LI +F+++    P+GG    G +        
Sbjct: 121 LKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFE-------- 172

Query: 190 DKARYMVLPATSLALFYVAIYARLTRAAMLEVKNHDFVRTAYAKGLTPFGVTARHILRNA 249
               YM LP   ++L YVA +AR+TR +M+E  N +F+RTA AKGL+   +  +H L+ A
Sbjct: 173 ----YMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPA 228

Query: 250 LIPITTMAGMHIGGMLGGAVVVETVYSWPGLGRLAFEAVMGRDFTVLLGILLLSSLLVII 309
           L+P+ +  G    G++ G+VV+ET++  PG+G+L   A   RD+++++G+ +L   L I+
Sbjct: 229 LLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFIL 288

Query: 310 ANAAVDLVHAWLDPRI 325
            NA VD++ A++DP+I
Sbjct: 289 FNAIVDILLAYIDPKI 304