Pairwise Alignments

Query, 481 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 490 a.a., recombinase RecA from Herbaspirillum seropedicae SmR1

 Score =  129 bits (323), Expect = 3e-34
 Identities = 123/472 (26%), Positives = 198/472 (41%), Gaps = 26/472 (5%)

Query: 10  TVVSSGISGLDEILRGGLPASNLYIVQGAPGSGKTTAALQFLRAGVALGEPCIYVSLSQT 69
           +++S+GI+G DEIL GGLPA +LY++QG  GSGKTT A Q   A    G   + ++L   
Sbjct: 21  SLLSTGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLASQIGWAQARGGNQVMLLTLI-- 78

Query: 70  RAELEAIALSHGWTLDGIRVEELSASDSINRAADQTIFQTTELRLDETRKAIESAIEEHK 129
            AE  A  L+H    D    +E    D +   +      +  LR     + I + +  H+
Sbjct: 79  -AESHAKMLNHVSNFDFF--DESLVGDRMQMLSGYAALASEGLR--GLLRMISAELSRHR 133

Query: 130 PSRLVYDSLLEIRLITADSPRFRRELIAFKAFLAQRNIVALLLDTQTSETDRTGEEVDGI 189
           P+ L+ D    +R            + +  A +   N   LLL           E  + +
Sbjct: 134 PAMLIIDGFRSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPVEGNLP---ESENTL 190

Query: 190 AHGVIRLDKSLEEYGGVRRRIEVSKMRGVPVADGYHDMAIREGEGVVVFPRI-------- 241
             GVI L +  E    + R I+V K+RG     G H   I +  GV +FPR         
Sbjct: 191 VDGVIELSQ-YESGMQLVREIKVFKLRGANHLLGKHVFEINQ-SGVEIFPRFEATATRAG 248

Query: 242 -VPGAAARTVKPQLIKSGVDTLDEMFGGGQESGTTTLVIGQAGTGKSTMASLYATAALKR 300
            VPG + R      +  G+ + D+  GGG  SG+ T ++G  G GK+ M   +    LK 
Sbjct: 249 KVPGTSDR-----YVSVGIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQGLKD 303

Query: 301 GESVGLFLFEERIETFFRRSEGLGMALRQFHEDGQLILRDFNPNEISPGEFGQIVQQSVN 360
           G+   +  F E  E    ++   GM L    + G L +    P E+   +  + +   + 
Sbjct: 304 GQQCLILGFYESPERLLAKARKAGMQLDAHIDSGALQVMWQLPLEMLCDDLAKRMLDDIA 363

Query: 361 SEKVKVVVIDSFTGYLNSLPHREKAVRDIQSLLKYLARAGVLTILIVAQHGLLGQGVGID 420
              V  ++ID   G  + +   ++    + +L   L   GV T +             +D
Sbjct: 364 RRGVTRLLIDGVDGLRSIVVQPQRMRPFLVALTNELRARGVTTFITEQLPYFRESRPQVD 423

Query: 421 VDVSFLGDTVLLLRIAEHEGRLRRSITVVKKRHGPHDLDVRELFIQSSGVSV 472
              S L + ++LL     +   RR I V+K R   +D   R + I  +G+ +
Sbjct: 424 PSSSQLYENMMLLEYVVKDDVNRRQIAVMKLRENGYDGAARLMNISDAGIEI 475



 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 12/239 (5%)

Query: 239 PRIVPGA--AARTVKPQLIKSGVDTLDEMFGGGQESGTTTLVIGQAGTGKSTMASLYATA 296
           P+ +P A    R  +  L+ +G+   DE+ GGG  +G+  L+ G AG+GK+T+AS    A
Sbjct: 5   PQSLPPAPTGGRPSRISLLSTGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLASQIGWA 64

Query: 297 ALKRGESVGLF-LFEERIETFFRRSEGLGMALRQFHEDGQLILRDFNPNEISPGEFG--Q 353
             + G  V L  L  E                     D   +L  +     S G  G  +
Sbjct: 65  QARGGNQVMLLTLIAESHAKMLNHVSNFDFFDESLVGDRMQMLSGY-AALASEGLRGLLR 123

Query: 354 IVQQSVNSEKVKVVVIDSFTGYLNSLPHREKAVRDIQSLLKYLARAGVLTILIVAQHGLL 413
           ++   ++  +  +++ID F    +S P        + SL   +      T+L+    G L
Sbjct: 124 MISAELSRHRPAMLIIDGFRSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPVEGNL 183

Query: 414 GQGVGIDVDVSFLGDTVLLLRIAEHEGRLRRSITVVKKRHGPHDLDVRELFIQSSGVSV 472
            +        + L D V+ L   E   +L R I V K R   H L      I  SGV +
Sbjct: 184 PE------SENTLVDGVIELSQYESGMQLVREIKVFKLRGANHLLGKHVFEINQSGVEI 236