Pairwise Alignments

Query, 497 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  353 bits (907), Expect = e-102
 Identities = 208/496 (41%), Positives = 297/496 (59%), Gaps = 12/496 (2%)

Query: 4   LIEMAAISKAFGGSVALRDVSLALAPGTVHALMGENGAGKSTLMKILAGVHQPDSGEVRR 63
           ++ ++ I KAF G  AL   SL + PG V ALMGENGAGKSTLMK+L G++  D+G +  
Sbjct: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEY 64

Query: 64  AGRTVSFANPRAALEAGISTVFQELSLLPNMTIAENMFLGREPTGCFGGIDRRRMRVGTK 123
            G+ VSF  PR +  AGIS + QEL+L+P +TIAEN+FLGRE T  FG I    M     
Sbjct: 65  QGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKAD 124

Query: 124 DALARLGLTLDPDTLVSELSIAERQFVEIAHGIDSDADVFILDEPTAALNAADVEVLNRH 183
             LARL +     TL+ ELS+ E+Q VEIA  +  ++ V I+DEPT AL   + E L   
Sbjct: 125 QLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNV 184

Query: 184 IRSLREAGKAIVYISHRMDEIFAICDVVTVLKDGQLVGTRPLSEMTPASLIAMMVGRELE 243
           I  LRE G  IVYISHR+ EIF ICD +TVL+DG+ +G   + +     LI MMVGR+LE
Sbjct: 185 INELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLE 244

Query: 244 DLFPERGQGEGAAALSVSGLRLHTDSQPFSFTVRKGEIVGFAGLEGQGQQKAVRALVGQF 303
           + +P     +G  +L V GL   +     SFT++KGEI+G +GL G G+ + ++ + G  
Sbjct: 245 EQYPRIAAQQGDISLEVIGL-TGSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGAL 303

Query: 304 APVEGTASRRGETIQLPVPKESGVRRWQALGGAFVPEDRKDEGLFLGHSVGQNIVAALHA 363
               G  +  G T+  PV  + G+    A G A++ EDRK +GL LG SV +N+  +L A
Sbjct: 304 PSERGVINLNGRTVN-PVSPQDGL----ANGIAYISEDRKGDGLVLGLSVKENM--SLCA 356

Query: 364 GRPTLKAAK-RYGD---VITETMRRLNIKASGPSAIVGALSGGNQQKVLLGRYLATDADL 419
                K  + R+ D    + + +R  NIK      I+G LSGGNQQKV + + L T   +
Sbjct: 357 LDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKV 416

Query: 420 LLIEEPTRGVDVGAKAEIYRILRDFAKAGGAVLVLSRETIELIGLCERLYVIHGNTAVSE 479
           L+++EPTRGVDVGAK EIY+++  F   G +++++S E  E++G+ +R+ V+H      E
Sbjct: 417 LILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGE 476

Query: 480 IRAVDATEHSILNAAL 495
             A +A +  ++  A+
Sbjct: 477 FMASEADQEKLMACAV 492



 Score = 89.4 bits (220), Expect = 3e-22
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 20  LRDVSLALAPGTVHALMGENGAGKSTLMKILAGVHQPDSGEVRRAGRTVSFANPRAALEA 79
           + DVS  L  G +  + G  GAG++ LMK++ G    + G +   GRTV+  +P+  L  
Sbjct: 269 VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLAN 328

Query: 80  GISTVFQELS---LLPNMTIAENMFLGREPTGCFGGIDRRRMRVGTKDALARLGLTLDP- 135
           GI+ + ++     L+  +++ ENM L        G   R    V   D   RL     P 
Sbjct: 329 GIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKTPS 388

Query: 136 -DTLVSELSIAERQFVEIAHGIDSDADVFILDEPTAALNAADVEVLNRHIRSLREAGKAI 194
            + ++  LS   +Q V IA G+ +   V ILDEPT  ++    + + + I   +  G +I
Sbjct: 389 REQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSI 448

Query: 195 VYISHRMDEIFAICDVVTVLKDGQLVGTRPLSEMTPASLIAMMVGR 240
           + +S  M E+  + D + V+ +G++ G    SE     L+A  VGR
Sbjct: 449 ILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494