Pairwise Alignments

Query, 323 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  182 bits (463), Expect = 8e-51
 Identities = 114/333 (34%), Positives = 177/333 (53%), Gaps = 24/333 (7%)

Query: 1   MTSSSSTFEKLLTSRGSRRGLWLLPLVIAIAMALWLAATTS----QFGQSSNLANLVAQG 56
           MT+++S   K L S+      WL+     IA+ L+L    S     F    NL N++ Q 
Sbjct: 12  MTNTTSDNRKKLLSKE-----WLIEQKSLIAL-LFLVVVVSFLNPNFFTVDNLLNILRQT 65

Query: 57  MPLLITAVGQMFVVLVGGLDLSIGSVVS----FTTAILALDLPGFVTIPAVFVLAGLIGA 112
               I AVG   V+L  G+DLS+GSV++    F   ++A+++P  V +P   +    +GA
Sbjct: 66  SVNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGA 125

Query: 113 TNGYCVTRLSVHPIVATLSMQYIVLGITRVL---RPVSGGAVP--DSVRWMVEGSLFGIP 167
            +G  + +  V   +ATL    ++ G+T V    RP+S G     D+  W   G   GIP
Sbjct: 126 ISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIP 185

Query: 168 LPVFWGIVTMLVAWKLLYGSRYGLHLFAIGGGVASGSADAARNFGIPANRNILLAYVICT 227
           +PV+  +V    AW LL  +R+G +++A+GG     +  A R  GI  +R  +  Y IC 
Sbjct: 186 VPVWLMVVVFAGAWYLLNHTRFGRYVYAVGG-----NESATRLSGINVDRVKIGVYAICG 240

Query: 228 LFAALAGVFLAGRIVSGDPNVGLLMELDAITAVAIGGTQLSGGVGSLHGTVIGVAALALL 287
           L AALAG+ +  R+ S  P  G+  ELDAI AV +GGT L GG G + GT+IG   +  L
Sbjct: 241 LLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFL 300

Query: 288 SNGMNLLNVTPFVQTAIKGILLMAVVALQSRKK 320
           +N +NLL+V+ + Q   K ++++  V + ++ K
Sbjct: 301 NNALNLLDVSSYYQMIAKAVVILLAVLVDNKNK 333