Pairwise Alignments

Query, 781 a.a., MrcB penicillin binding protein B from Sinorhizobium meliloti 1021

Subject, 807 a.a., penicillin-binding protein, 1A family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  153 bits (386), Expect = 4e-41
 Identities = 108/284 (38%), Positives = 152/284 (53%), Gaps = 28/284 (9%)

Query: 458 QAALVAMTPD-GAVVAMVGGRDYKQSQFNRAVTAMRQPGSTFKLFVYYAALKAGFTPTDR 516
           Q A+V + PD G V+A+VGG  +  SQFNRA+ A RQPGS+FK  VY AA+  GFT    
Sbjct: 460 QGAVVTIEPDTGDVLALVGGYSFSDSQFNRAIQARRQPGSSFKPIVYSAAMDHGFTAGSV 519

Query: 517 VLDAP-IDVNG-----WSPENSSGRYRGWVSIAEAFARSLNAPTVALAQEVGLDNVIAAA 570
           VLDAP + +N      W PEN  G + G   +  A A+S N  T+ +AQ++G+  VI  A
Sbjct: 520 VLDAPFVYLNEYTDKIWRPENFEGVFYGPTLLRTALAKSRNLCTIRVAQKIGIPAVIERA 579

Query: 571 RELGIDAPLVSTPSLALGTSEVSLLELTSAY---------ASVRFGKAPVEPWGIVHFQA 621
             LG++ P  +  S++LG   VS + +  AY         A  RF  +  + WG   F++
Sbjct: 580 TALGLEGPFPNELSVSLGAVAVSPINMAEAYTAFAAEGRVAKRRFIHSIGDAWGETLFES 639

Query: 622 AGQPRAFRVGSHTTPAIDLSAYQSDLVGLLQLAVERGTGREADP-GAFAAGKTGTSQNNR 680
             +P    V S     I        +  L++  V+ GT  +A   G   AGKTGT+ + R
Sbjct: 640 --KPDVREVLSPQNAFI--------MATLMKEVVQDGTATKAKVLGKPLAGKTGTTNDER 689

Query: 681 DAWFVGFTEPLIAAVWVGNDDDTPM-KGVTGGDLPAHIWRDFMR 723
           DAWF+G+T  L+ AV+VG D   PM K  TGG     I+ D+ +
Sbjct: 690 DAWFIGYTPHLVTAVYVGFDQVAPMGKFETGGRAALPIFVDYRK 733



 Score =  149 bits (376), Expect = 6e-40
 Identities = 108/310 (34%), Positives = 159/310 (51%), Gaps = 32/310 (10%)

Query: 165 LIGAVMVWALKDVPWNEIRNGTLKPVVVLETADGEPLVRQGPYQGPYAQYNQF------- 217
           L   ++VWA  D+P +  R    +P +V          R G   G + +  +F       
Sbjct: 22  LAAMLVVWASHDLP-SFTRIADYRPPLVTTV-----YARDGSVMGYFYREKRFLAPLDKM 75

Query: 218 PPHLIDAVLSIEDRRFMDHFGIDVRGIGRALVRNFEAGSVIEGGSTITQQLIKLQYLDSD 277
            P +  A L+ ED  F  H GID   I RA ++N +AGS+ +GGSTITQQ++K   L S+
Sbjct: 76  SPRVPQAFLAAEDDGFYRHEGIDPIAIFRAFLKNMQAGSIKQGGSTITQQIVKRLLLTSE 135

Query: 278 RTIKRKIQEFVIALWLELKLGKKEILTRYLNSAYLGAGATGMPAAARVYFNKNIDVLNLP 337
           ++ +RKI+E ++A  LE  L K EILT YLN  YLG GA G+ AAAR YF K+++ L+L 
Sbjct: 136 KSYERKIKEAILAYRLEKYLSKDEILTIYLNQIYLGGGAYGVEAAARTYFGKHVNELSLA 195

Query: 338 ESAMLAGLLRAPSQWNPIDNLEGARQRTAVVLDTMVANGKIT-APDAERVKESFATLNPT 396
           E+A++ GL +APS++NP  + +  RQR   VL  M+  G I  A   E V +     +  
Sbjct: 196 EAAVIGGLPQAPSKYNPFRDPDATRQRQMYVLHRMLDLGWINRAEYDEAVAQPLVYRSMD 255

Query: 397 MPTPRSGSWFADWISPRA----SEIAGPSPGTTT--------------VRTTLVPHLQQI 438
               R G+W+ + +  +     SE      G                 VRT++ P  Q  
Sbjct: 256 DSGWREGAWYLEEVRRQLIDFFSEANVKRLGLKVDRYGEDAIYELGLHVRTSMEPLHQSA 315

Query: 439 AERVVRNALD 448
           AE+ +RN L+
Sbjct: 316 AEKALRNGLN 325