Pairwise Alignments

Query, 382 a.a., membrane efflux protein from Sinorhizobium meliloti 1021

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 91/378 (24%), Positives = 140/378 (37%), Gaps = 52/378 (13%)

Query: 13  KRKFLLTAIGLVAAAAGAAFAFVFETPARDAESADPRLAPPLVRVAEATRPERAERAFTG 72
           KR  L   I      AG   A     PA       P + P L  +  + R   ++  F G
Sbjct: 12  KRSLLSAVIASALLLAGCGEAPQISAPA-------PVVKPALTEIVASQRA--SDLTFNG 62

Query: 73  TIAARVQSNLGFRVPGKIVERLVDVGQQVKAGQALMRIDETDLRLALTAKRNAVAAARAV 132
            + A  +++L FR+ G++ +  V  G QVK GQ L  +D  D + AL        AA+  
Sbjct: 63  VVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTAL-------EAAQLE 115

Query: 133 LVQAIADERRYATLVKGGVAATPQRYEQAKAALDTAAAQLAAAEAEARVAENETTYSVLV 192
           L     + RR   + +   A        +KA LD    +   A+     A+ +  Y+ + 
Sbjct: 116 LKNTEQEYRRAKAIFEKTQAI-------SKAELDKVTNRYDLAKNRVEEAKRKLEYTQIT 168

Query: 193 AGADGTVVATLGEPGQVVAAGQAVVQLAHAGLREALVALPETVRPAIGSEAEASVYGSDG 252
           A  DG +     E    V A Q ++ L      E  + +P  V           + G   
Sbjct: 169 APFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRV----------MLSGVRN 218

Query: 253 RRGRARMRQI-SDAADPQTRTYEARYVLDGDAASAPLGATVTISIRNGEGQSEVAVPV-- 309
            R  A +  I +   D + RTY  +   D    S  LG       R   G S   +PV  
Sbjct: 219 TRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVAD 278

Query: 310 --------------GAVLNDGSRTGVWVVD-QASATARFVPIEIKRLGEETASVTGIELG 354
                           V ++  +  VWVV+ Q  A  R+V I      +       ++ G
Sbjct: 279 KPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIG-TTYKDRVVITQHLKPG 337

Query: 355 EQVVALGAHLLKDGAPVR 372
           EQV+  G   +++G  VR
Sbjct: 338 EQVIIAGVSSVREGMTVR 355