Pairwise Alignments

Query, 382 a.a., membrane efflux protein from Sinorhizobium meliloti 1021

Subject, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 82/310 (26%), Positives = 139/310 (44%), Gaps = 26/310 (8%)

Query: 68  RAFTGTIAARVQSNLGFRVPGKIVERLVDVGQQVKAGQALMRIDETDLRLALTAKRNAVA 127
           R F  T AA  ++ L FRVPG++    V  GQ+VK G+ L R++  +  L    ++ A A
Sbjct: 47  RQFPATTAAGDRAVLAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYAL---LEQQASA 103

Query: 128 AARAVLVQAIADERRYATLVKGGVAATPQRYEQAKAALDTAAAQLAAAEAEARVAENETT 187
             +   VQ    +R     ++     + Q ++QA+A  ++A A    A+A  R       
Sbjct: 104 NFQLADVQFQRAQR-----LRQDKVVSEQDFDQAQANHNSAKATWEQAKANLR------- 151

Query: 188 YSVLVAGADGTVVATLGEPGQVVAAGQAVVQLAHAGLREALVALPETVRPAI---GSEAE 244
           Y+ L+A  DGT+     E  + VAA Q V+ +    L +    LP+ +       G EA 
Sbjct: 152 YTQLIAPYDGTISLIPAEQYEYVAAKQGVMNIQTNQLLKVQFLLPDHLLNRFSRDGVEAH 211

Query: 245 ASVYGSDGRRGRARMRQISDAADPQTRTYEARYVLD--GDAASAPLGATVTISIRNGEGQ 302
                   R+   + ++I   AD +TR+Y+   V++   D    P G    +S+    G 
Sbjct: 212 MVFDSFPNRQYPLQFQEIDTEADSKTRSYKVTMVMERPNDVGILP-GMAGRVSLMAPSGS 270

Query: 303 SEVAVPVGAVLNDGSRTGVWVVDQASATARFVPIEIKRLGEETASVTGIELGEQVVALGA 362
           + V +P  A+  +     VW VD A   ++        L E+   +TG+  G++++  G 
Sbjct: 271 ATV-IPTSALFAEQGGKYVWRVDDAGLVSK----AAVTLNEQRQVLTGLNDGDRIIISGV 325

Query: 363 HLLKDGAPVR 372
             + +G  VR
Sbjct: 326 SGVTEGIKVR 335