Pairwise Alignments

Query, 382 a.a., membrane efflux protein from Sinorhizobium meliloti 1021

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 81/320 (25%), Positives = 144/320 (45%), Gaps = 31/320 (9%)

Query: 68  RAFTGTIAARVQSNLGFRVPGKIVERLVDVGQQVKAGQALMRIDETDLRLALTAKRNAVA 127
           R+F   +AA  Q+ L FR+ G+++E  +  GQ+V  G+ L R+D+ D R       N + 
Sbjct: 49  RSFPAKVAATKQAELSFRLSGQLIEFSLVDGQRVTKGEVLARLDDRDAR-------NQLL 101

Query: 128 AARAVLVQAIADERRYATLVKGGVAATPQRYEQAKAALDTAAAQLAAAEAEARVAENETT 187
              A    A AD  R   L++  + +        +A  D A AQL ++ A    A+++ +
Sbjct: 102 NREADHELAQADFNRKGELLRQALIS--------QAEYDLAKAQLKSSAANLASAQDQLS 153

Query: 188 YSVLVAGADGTVVATLGEPGQVVAAGQAVVQLAHAGLREALVALPETV-------RPAIG 240
           Y+V+ A   GTV  T  E  Q+V A Q V+ L      + ++ +PE++        P   
Sbjct: 154 YTVIKAPFSGTVAKTKIENFQIVQANQPVLVLQKDRFIDVVIQVPESLASRVTSFNPHSP 213

Query: 241 SEAEASVYGSDGRRGRARMRQISDAADPQTRTYEARYVLDGDAASAPL---GATVTISIR 297
           S    +      ++  AR+++ +    P T++YE  + L      + L    A + + I 
Sbjct: 214 SLPMVTFSNHPEQQYAARLKEFATQVTPGTQSYEVVFTLPTPTEFSVLPGMSAQLILDIA 273

Query: 298 NGEGQSEVA-VPVGAVL---NDGSRTGVWVVDQASATARFVPIEIKRLGEETASVT-GIE 352
             + + + A VP  AVL    DG    VW  D  +       + + ++  +   +T G+ 
Sbjct: 274 GPDAKKKSAIVPPSAVLKRDQDGEPI-VWTYDLGTGQVSARKVSLGKVTSQGIEITQGLT 332

Query: 353 LGEQVVALGAHLLKDGAPVR 372
           +G++VV  G   L +   V+
Sbjct: 333 VGDRVVVAGVAQLHESQQVK 352