Pairwise Alignments

Query, 1036 a.a., Cation/multidrug efflux protein from Sinorhizobium meliloti 1021

Subject, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  493 bits (1270), Expect = e-143
 Identities = 300/1018 (29%), Positives = 529/1018 (51%), Gaps = 15/1018 (1%)

Query: 4    NLSALAVRERAVTLFFIVLLAAAGVYAFMSLGRAEDPSFTIKTLTVTTVWPGATAREMQD 63
            +++   + +R      I L    G  +++ LGR EDP F I+   + T +PGATA+E+ D
Sbjct: 2    DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61

Query: 64   LVAEPLEKRIQELTWYDRVETTTRPGYAFLTVTLKDSTPPTA--VEEEFYQARKKLGDEA 121
             V + +E  +Q L     V++ +  G + +TV +K     ++  +++ + + R+K+ D  
Sbjct: 62   EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121

Query: 122  RNLPSGVFGPFVNDEYSDVSFALYALKAKGMPMRELVRQAEVIRQDLLHVPGVKKINILG 181
            R LP G     VND++SDV    YA+  +G   ++L    + +R++L+ VPGV K   L 
Sbjct: 122  RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181

Query: 182  ERPEQIFVEFSYAKLATLGISAQDIAAALQRQNTVTPAGSIDTRGPQVFIRFDGAYNSVQ 241
            E+ E IF+E S  ++A  G+S + +   LQ+Q+ VT AGS+D +  ++ +      +S+ 
Sbjct: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241

Query: 242  AIAATPIVAAGRT--LKLSDFAEVRRGYEDPATYIIRHEGEPAIMLGAVMQQGWNGLELG 299
             +    +        ++L D A + RGY +PA+ ++R+ G+ AI  G     G N +E+G
Sbjct: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301

Query: 300  KALEERSAAIARTLPLGMTLAKVSDQAVNIDAAVGEFMLKFAMALGVVLLVSLLSLGWRV 359
             A++ R A +    PLGM L  +S Q+ ++ A+V  F+     A+ +V +V LL +G R 
Sbjct: 302  DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361

Query: 360  GIVVALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIEVMVVKMEE-- 417
            G+++   + LT+A    +ML       RI+LGALI+ALG+LVD+AI+  + ++V+ ++  
Sbjct: 362  GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421

Query: 418  GMDRIKAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVGFALIVSWV 477
              D+ +  +   + T  P+L GT+V I     +G + S  GEYAG++FWV+ +++ +SWV
Sbjct: 422  NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481

Query: 478  VAVIFTPYLGVKMLPDIKPVEGGHHAIYDTPNYRRLRGIIEFAVRHKYVTCAVVGIVMAL 537
             AV  TP L    L    P +    +   T      + ++++ + H+ V+CA++   +  
Sbjct: 482  FAVTVTPMLCHDFLRVKAPTKEAKPSKLVTG----YKAVLQWVLSHRVVSCAMLLGTLVA 537

Query: 538  SVVGMGGVKHQFFPTSDRPEVLVEVRMPEGASIETTIATVEKLERWLQEQPEADILTSYI 597
            +V G   +   F P S RP+ +V+V +P+G+ I  T   V  +E+ + ++     +TS+I
Sbjct: 538  AVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITSFI 597

Query: 598  GQGAPRFFFAMAPELPDPAFAKIVVLTPDSHAREALKLRLRAAVSDGLVPEGYVRVTQLV 657
            G G  RF    +PE  +P++ ++++   D      L   L+  + D   P+  ++V + +
Sbjct: 598  GGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNEL-DAKYPDASIKVWKFM 656

Query: 658  FGPYTPFPVEFRIMGPDPAQLYQISEKALEIMKGVPDVRQANRDWGNRTPVLRFVPDQDR 717
             G      +E    GPD   L Q++E+A  IM   P++     DW  + PVL+ V     
Sbjct: 657  LGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQE 716

Query: 718  LNLIGLSPAEAAQQMQLLLSGIPVTQVRENIRNVPVVARSAGESRLDPARLADFSLMSRD 777
               +GL+  E +  +   L+G  V   RE    +P++ R+    R     + +  + S  
Sbjct: 717  AQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSAQ 776

Query: 778  -GRQVPLDQIGHS-EIRFEEPILKRRDRTPVITIRSDINEATQPPEVSQQIMTALQPLIA 835
             GR +P+ Q+  S +  +++ +L+R +R P I +++D        +    +   ++ +  
Sbjct: 777  AGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIEQI-- 834

Query: 836  SLPVGYRIEMGGNIEESLKANVALVKIFPAMIAAMLIVIILQVRSLSTMTMVMLTAPLGL 895
             LP GY +   G  + S  AN  L    P   AAM++ ++    +L    ++ +TAP  +
Sbjct: 835  ELPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPFAV 894

Query: 896  AGVVPVLLLFNQPFGFNAILGLIGLAGILMRNTLILTEQIKENKAAGLHDYHAVIEATVQ 955
             GV   L+ F  PF F AILG + L G++++N ++L +Q      AG   Y A+I+A V 
Sbjct: 895  VGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAAVS 954

Query: 956  RTRPVILTALAAVLAFVPLTHSVFWGSMAYTLIGGTAVGTVMILLFLPALYAAWFRIK 1013
            R RPV+L A   +L   PL    F+ SMA T++ G    T++ L+ +P  YA  FR+K
Sbjct: 955  RARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLFRVK 1012