Pairwise Alignments

Query, 1036 a.a., Cation/multidrug efflux protein from Sinorhizobium meliloti 1021

Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  259 bits (662), Expect = 7e-73
 Identities = 246/1031 (23%), Positives = 455/1031 (44%), Gaps = 57/1031 (5%)

Query: 5    LSALAVRERAVTLFFIVLLAAAGVYAFMSLGRAEDPSFTIKTLTVTTVWPGATAREMQDL 64
            LS ++V+     L   +LL   GV +F  L   E P      ++V+T + GA+A  ++  
Sbjct: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62

Query: 65   VAEPLEKRIQELTWYDRVETTTRPGYAFLTVTLKD----STPPTAVEEEFYQARKKLGDE 120
            +   LE ++  ++  D + + +R G + +TVT +     +T  + + +   +A++ L +E
Sbjct: 63   ITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEE 122

Query: 121  A------RNLPSGVFGPFVNDEYSDVSFALYALKAKGMPMRELVRQAEVIRQDLLH-VPG 173
            A      +N  SG    ++N            L +  M   +L    E +  D    + G
Sbjct: 123  ADDPQVFKNNGSGQASVYIN------------LSSSEMDRTQLTDYIERVLLDRFSLISG 170

Query: 174  VKKINILGERPEQIFVEFSYAKLATLGISAQDIAAALQRQNTVTPAGSIDTRGPQVFIRF 233
            V  +++ G   + ++V      +A  G++  DI+ AL ++N  +P G +      + +R 
Sbjct: 171  VSSVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRT 230

Query: 234  DGAYNSVQAIAATPIVAA--GRTLKLSDFAEVRRGYEDPATYIIRHEGEPAIMLGAVMQQ 291
               Y S +      +  A  G  + L D A+V  G E+  +   + +G   + +G V Q 
Sbjct: 231  ARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENS-TFKSDGIVNVSMGIVPQS 289

Query: 292  GWNGLELGKALEERSAAIARTLPLGMTLAKVSDQAVNIDAAVGEFMLKFAMALGVVLLVS 351
              N LE+ K + E    + + LP G  LA   D  V I+ ++ E      +  G+V+LV 
Sbjct: 290  DANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVL 349

Query: 352  LLSLGW-RVGIVVALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIEV 410
             + +G  R  ++ A+ VP++L   F+     G   + ITL ALIL++GL+VDDAI+ +E 
Sbjct: 350  YIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVEN 409

Query: 411  MVVKMEEGMDRIKAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVGF 470
            +   +E G   + AA          +++ TLV ++  +P+ F     G        ++  
Sbjct: 410  IFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAM 469

Query: 471  ALIVSWVVAVIFTPYLGVKML-PDIKPVEGGHHAIYDTPNYRRL----RGIIEFAVRHKY 525
            A+I S ++A+  TP LG K+L  ++KP  G  + + D   + RL    R ++  A+R ++
Sbjct: 470  AVIFSSLIALTLTPVLGSKLLKANVKP--GRFNQLIDR-LFARLESGYRQVVSRAIRWRW 526

Query: 526  VTCAVVGIVMALSVVGMGGVKHQFFPTSDRPEVLVEVRMPEGASIETTIATVEKLERWLQ 585
                V+   +  S   M  V  Q  P+ DR  +   VR  +  S     A ++ +E+ L 
Sbjct: 527  AAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLM 586

Query: 586  EQPEADILTSYIGQGAPRFFFAMAPELPDPAFAK---IVVLTPDSHAREALKLRLRAAVS 642
                       +GQG  + F   +P     A  +   ++++  D + R        + V 
Sbjct: 587  ---------PLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVR 637

Query: 643  DGLVPEGYVRVTQLV--FGPYTPFPVEFRIMGPDPAQLYQISEKALEIMKGVPDVRQANR 700
              L     VRV   +  F   +  PV+F + G D ++L   +EK  E  +  P +  A+ 
Sbjct: 638  KALAGIPDVRVFPFMPGFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADI 697

Query: 701  DWGNRTPVLRFVPDQDRLNLIGLSPAEAAQQMQLLLSGIPVTQVRENIRNVPVVARSAGE 760
            D+  +TP L    D+ R   +G+S    +  ++++L G  VT   E      V  R    
Sbjct: 698  DYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDEN 757

Query: 761  SRLDPARLADFSLMSRDGRQVPLDQIGHSEIRFEEPILKRRDRTPVITIRSDINEATQPP 820
            S  + A L+   + +  G  V LD +   +       L   ++   +TI +++       
Sbjct: 758  SFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGY--- 814

Query: 821  EVSQQIMTALQPLIASLPVGYRIEMGGNIEESLKANVALVKIFPAMIAAMLIVIILQVRS 880
             + Q +    Q     LP    +   G  ++  +   ++  +F   +    +V+  Q  S
Sbjct: 815  TLGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFES 874

Query: 881  LSTMTMVMLTAPLGLAGVVPVLLLFNQPFGFNAILGLIGLAGILMRNTLILTEQIKENKA 940
                 +VMLT P+G+ G    L +  Q     + +G+I L G++ +N +++ E   + + 
Sbjct: 875  FINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRD 934

Query: 941  AGLHDYHAVIEATVQRTRPVILTALAAVLAFVPLTHSVFWGSMAYTLIG-----GTAVGT 995
             G+    A+I+A+ +R RP+++TA   +   +PL  S   G  +   +G     G    T
Sbjct: 935  RGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFAT 994

Query: 996  VMILLFLPALY 1006
            ++ LL +PA+Y
Sbjct: 995  LVTLLVIPAMY 1005