Pairwise Alignments

Query, 1036 a.a., Cation/multidrug efflux protein from Sinorhizobium meliloti 1021

Subject, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  270 bits (689), Expect = 5e-76
 Identities = 248/1020 (24%), Positives = 452/1020 (44%), Gaps = 35/1020 (3%)

Query: 5    LSALAVRERAVTLFFIVLLAAAGVYAFMSLGRAEDPSFTIKTLTVTTVWPGATAREMQDL 64
            LS ++V+   V +   +LL   G+ +F  L   E P      +TV+T + GA+A  M+  
Sbjct: 3    LSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIMESQ 62

Query: 65   VAEPLEKRIQELTWYDRVETTTRPGYAFLTVTLKDSTPPTAVEEEFYQARKKLGDEARNL 124
            + + LE  +  ++  D + +TTR G + +TV        T   E     R  +    R L
Sbjct: 63   ITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLT---EGVSDVRDAVARAQRRL 119

Query: 125  PSGVFGPFVNDEYSDVSFALYA-LKAKGMPMRELVRQAEVIRQDLLH-VPGVKKINILGE 182
            P     P V+ +      ++Y  L +  M   +L   A+ + +D    + GV  I+I G 
Sbjct: 120  PEDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGG 179

Query: 183  RPEQIFVEFSYAKLATLGISAQDIAAALQRQNTVTPAGSIDTRGPQVFIRFDGAYNSVQA 242
              + ++V+    ++A   ++  DI +AL+++N  TP G +      + +R    Y + + 
Sbjct: 180  LYKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKD 239

Query: 243  IAATPIVAA--GRTLKLSDFAEVRRGYEDPATYIIRHEGEPAIMLGAVMQQGWNGLELGK 300
                 +  A  G  + L D A+V  G ++  +   + +G   + LG + Q   N L + +
Sbjct: 240  FDYLVVRTASDGTPIYLKDVADVAVGAQNENS-TFKSDGIVNLSLGVITQSDANPLVVAQ 298

Query: 301  ALEERSAAIARTLPLGMTLAKVSDQAVNIDAAVGEFMLKFAMALGVVLLVSLLSLGW-RV 359
             + +    I   LP G +L    D  V ID ++ E      +   +V+LV  + +G  R 
Sbjct: 299  EVHKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRA 358

Query: 360  GIVVALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIEVMVVKMEEGM 419
             ++ A+ VP++L   F+     G   + +TL ALILA+GL+VDDAI+ +E +   +E+G 
Sbjct: 359  TLIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGE 418

Query: 420  DRIKAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVGFALIVSWVVA 479
            + + AA          +++ T V ++  +P+ F     G        ++  +++ S ++A
Sbjct: 419  EPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIA 478

Query: 480  VIFTPYLGVKML-PDIKPVEGGHHAIYDTPNYRRLRGI-IEFAVRHKYVTCAVVGIVMAL 537
            +  TP L  K+L  ++KP               +L  + +  A+R + +   V+   +  
Sbjct: 479  LTLTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACIGG 538

Query: 538  SVVGMGGVKHQFFPTSDRPEVLVEVRMPEGASIETTIATVEKLERWLQEQPEADILTSYI 597
            SV  M  V  Q  P  DR  +   V+  EG S     A ++ +E         D L   +
Sbjct: 539  SVWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVE---------DRLMPLL 589

Query: 598  GQGAPRFFFAMAPELPDPA---FAKIVVLTPDSHAREALKLRLRAAVSDGL--VPEGYVR 652
            GQG  R F   AP     A      +++   D   R     +    +S  L  +P+  VR
Sbjct: 590  GQGVLRSFSVQAPAFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMVR 649

Query: 653  VTQLVFGPYTPFPVEFRIMGPDPAQLYQISEKALEIMKGVPDVRQANRDWGNRTPVLRFV 712
                 F   +  PV+F + G D A+L++ ++   E     P +  A+ D+   TP L   
Sbjct: 650  PMMPGFRGQSSEPVQFVLGGSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVT 709

Query: 713  PDQDRLNLIGLSPAEAAQQMQLLLSGIPVTQVRENIRNVPVVARSAGESRLDPARLADFS 772
             D++R   +G+S  + +Q ++++L G   T   +      V  R    S  +   L+   
Sbjct: 710  VDKERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIY 769

Query: 773  LMSRDGRQVPLDQIGHSEIRFEEPILKRRDRTPVITIRSDINEATQPPEVSQQIMTALQ- 831
            + S  G  V LD + H E       L   ++   IT++++I++     E     +T L+ 
Sbjct: 770  MRSAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEA----LTFLEN 825

Query: 832  PLIASLPVGYRIEMGGNIEESLKANVALVKIFPAMIAAMLIVIILQVRSLSTMTMVMLTA 891
              I  LP    I   G  ++  +   ++  +F   +    +V+  Q  S     +VM T 
Sbjct: 826  KSIELLPKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTV 885

Query: 892  PLGLAGVVPVLLLFNQPFGFNAILGLIGLAGILMRNTLILTEQIKENKAAGLHDYHAVIE 951
            P+G+ G    LL+ +Q     + +G+I L G++ +N +++ E   + +  GL    A+I+
Sbjct: 886  PMGVFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLALDKAIID 945

Query: 952  ATVQRTRPVILTALAAVLAFVPLTHSVFWGSMAYTLIG-----GTAVGTVMILLFLPALY 1006
            A+ +R RP+++TA   ++  +PL  S   GS +   +G     G A  T + L  +PA+Y
Sbjct: 946  ASTRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMY 1005