Pairwise Alignments

Query, 1036 a.a., Cation/multidrug efflux protein from Sinorhizobium meliloti 1021

Subject, 1010 a.a., multidrug efflux membrane fusion protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  264 bits (674), Expect = 3e-74
 Identities = 225/1019 (22%), Positives = 459/1019 (45%), Gaps = 37/1019 (3%)

Query: 4    NLSALAVRERAVTLFFIVLLAAAGVYAFMSLGRAEDPSFTIKTLTVTTVWPGATAREMQD 63
            N+S L++R   +     +++   G   +  LG  E PS     ++V+  +PGA A  +++
Sbjct: 2    NISELSIRRPVLATVLTIIILLFGFIGYSYLGVREYPSVDNPIISVSCSYPGANADVIEN 61

Query: 64   LVAEPLEKRIQELTWYDRVETTTRPGYAFLTVTLKDSTPPTAVEEEFYQARKKLGDEARN 123
             + EPLE+ I  +     + + ++ G + +TV  + S     +E      R K+    R 
Sbjct: 62   QITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVD---LETAANDVRDKVSRAQRY 118

Query: 124  LPSGVFGPFVNDEYSD-VSFALYALKAKGMPMRELVRQAEV-IRQDLLHVPGVKKINILG 181
            LP     P V+   +D +   + AL++    + EL   A++ +++ L  +  V  ++I G
Sbjct: 119  LPRDCDPPTVSKADADAMPILMVALQSDKRSLLELSEIADLTVKEQLQTISDVSSVSIWG 178

Query: 182  ERPEQIFVEFSYAKLATLGISAQDIAAALQRQNTVTPAGSIDTRGPQVFIRFDGAYNSVQ 241
            E+   + +     K+A  GI+  D+  A+  +N   P+GSI+    ++ IR  G  ++  
Sbjct: 179  EKRYSMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLGLMHTAD 238

Query: 242  AIAATPIVAAG-RTLKLSDFAEVRRGYEDPATYIIRHEGEPAIMLGAVMQQGWNGLELGK 300
                  +     R ++ SD      G  D  +Y+ +  G P + +  + Q G N +E+  
Sbjct: 239  EFNNLIVKEDNNRIVRFSDIGRAELGPADIKSYM-KMNGVPMVGVVVIPQPGANHIEIAD 297

Query: 301  ALEERSAAIARTLPLGMTLAKVSDQAVNIDAAVGEFMLKFAMALGVVLLVSLLSL-GWRV 359
            A+ +R   + + LP  +T +   D    I A++ E      +A  +V+++  L L  WRV
Sbjct: 298  AVYKRMEQMKKDLPEDVTYSYGFDNTKFIRASINEVKETVYVAFILVIIIIFLFLRDWRV 357

Query: 360  GIVVALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIEVMVVKMEEGM 419
             +V  + +P++L   F +M   G   + +++ A++LA+GL+VDDAI+  E + +++E+GM
Sbjct: 358  TLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENIYIRIEKGM 417

Query: 420  DRIKAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVGFALIVSWVVA 479
               +A           ++S T+  +    P+ F +   G        V+  ++I+S   A
Sbjct: 418  SPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMQGMTGRLFREFSIVISGSVIISSFAA 477

Query: 480  VIFTPYLGVKMLPDIKPVEGGHHAIYDTPNYRRL-----RGIIEFAVRHKYVTCAVVGIV 534
            + FTP L  K+L  IK  +         P +  +     R +  F +R +++      I 
Sbjct: 478  LTFTPMLATKLL--IKREKQNWFYTKTEPFFEGMNRWYSRSLAAF-LRKRWLALPFTFIT 534

Query: 535  MALSVVGMGGVKHQFFPTSDRPEVLVEVRMPEGASIETTIATVEKLERWLQE-QPEADIL 593
            + L       +  +  P  DR ++ +  R  EG + E      E + + +    P+A+ +
Sbjct: 535  ICLIGFLWNAIPAEMAPLEDRSQISINTRGAEGVTYEYIRDYTEDINQLVDSILPDAEAV 594

Query: 594  TSYIGQGAPRFFFAMAPELPDPAFAKIVVLTPDSHAREALKLRLRAAVSDGLVPEGYVRV 653
            T+ +  G+      +  ++ D  + ++ V             ++  AV    +   +V+ 
Sbjct: 595  TARVSSGSGNVRITL-KDMKDRDYTQMEVAE-----------KISKAVQKKTMARSFVQQ 642

Query: 654  TQLVFGPYTPFPVEFRIMGPDPAQLYQISEKALEIMKGVPDVRQANRDWGNRTPVLRFVP 713
                 G     PV++ +   +  +L ++  + +  +   P  + A+ D     P  R   
Sbjct: 643  QSSFGGRRGSMPVQYVLQATNLEKLQEVLPQFMAKVYENPVFQMADVDLKFSKPEARIRI 702

Query: 714  DQDRLNLIGLSPAEAAQQMQLLLSGIPVTQVRENIRNVPVVARSAGESRLDPARLADFSL 773
            ++D+ +++G+S    AQ +Q  LSG  +     N +   ++     + R  PA L    +
Sbjct: 703  NRDKASVMGVSTKNIAQTLQYGLSGQRMGYFYMNGKQYEILGEINRQQRNKPADLKAIYI 762

Query: 774  MSRDGRQVPLDQIGHSEIRFEEPILKRRDRTPVITIRSDINEATQPPEVSQQIMTALQPL 833
             S +G  + LD +   E     P L R +R    TI + + +      + Q +    +  
Sbjct: 763  RSSNGDMIQLDNLIELENGIAPPKLYRYNRFVSATISAGLADG---KTIGQGLDEMDKIA 819

Query: 834  IASLPVGYRIEMGGNIEESLKANVALVKIFPAMIAAMLIVIILQVRSLSTMTMVMLTAPL 893
              +L   +R  + G+ +E  +++ +L+  F   I  + +++  Q  S     ++MLT PL
Sbjct: 820  KETLDDTFRTALSGDSKEYRESSSSLMFAFILAILLIYLILAAQFESFKDPLIIMLTVPL 879

Query: 894  GLAGVVPVLLLFNQPFGFNAILGLIGLAGILMRNTLILTEQIKENKAAGLHDYHAVIEAT 953
             +AG +  +   +      + +G+I L G++ +N +++ E   + + AG     A+ +A 
Sbjct: 880  AIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFANQKQEAGEDKMSAIKDAA 939

Query: 954  VQRTRPVILTALAAVLAFVPLTHSVFWG-----SMAYTLIGGTAVGTVMILLFLPALYA 1007
            +QR RP+++T+ + VL  +PL  +   G     +M   ++GG  V T++ +  +PA+Y+
Sbjct: 940  LQRLRPILMTSASTVLGLIPLAFASGEGANQRIAMGTAVVGGMVVSTLLTMYIVPAIYS 998