Pairwise Alignments

Query, 551 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 536 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  337 bits (864), Expect = 7e-97
 Identities = 208/531 (39%), Positives = 307/531 (57%), Gaps = 15/531 (2%)

Query: 3   NLVEIRDLKVEATTDTGRRVEIIKGVSLDVAEGEIVALIGESGSGKTTIA---LTLMGYA 59
           NL+E+RDL VE      RR  +++GVS D+  GE +AL+GESGSGK+  A   L L+ Y 
Sbjct: 5   NLIEVRDLAVEFIVGE-RRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPY- 62

Query: 60  RPGCRISGGSVLVAGNDLVTLTEKQRAKVRGTEVTYVPQSAAAAFNPAATIMDQVIEVTR 119
            P      G++  AG +L+ L EK    +RG  +  + Q    + NP  +I  Q+ EV  
Sbjct: 63  -PLAHHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLG 121

Query: 120 IHGLMAAAEARARAVELFRALSLPEPETIGSRYPHQVSGGQLQRLSAAMALISDPKLVIF 179
           IH  ++   A  R +EL   + +PEP       PH++SGGQ QR+  AMAL ++P+L+I 
Sbjct: 122 IHKGLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIA 181

Query: 180 DEPTTALDVTTQIEVLRAFKSVMKKGGIAGVYVSHDLAVVAQIADHIVVLKGGEVQEVGT 239
           DEPTTALDVT Q+++L   K +  + G++ + +SHDL +V +IA  + V++ G + E  +
Sbjct: 182 DEPTTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQAS 241

Query: 240 TEEILSSAKHPYTRELLSAFEPKPREAADAAERAPAPLLKIENLVAGYGASK---TDGLP 296
            EE+  + +HPYTRELL A EP    A++       PLL++E+L   +   K      + 
Sbjct: 242 CEELFRAPQHPYTRELLGA-EPSGTPASNV---VGPPLLQVEDLKVWFPIKKGLFKRTVD 297

Query: 297 LVRAVEDVSLKVEKGRNLGIIGESGCGKSTLARAIAGILPAAVGKIVFDGKELGRSARER 356
            ++AV+ +   + +G+ LGI+GESG GKSTL  AI  ++  + G I F+GK+L    +++
Sbjct: 298 YIKAVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLI-GSQGGIRFEGKQLDSLTQQQ 356

Query: 357 TRDQLREMQIVFQYADTALNPAKSVEDILDRPLVFYHGMNARARSLRIDELLDMVRLPRN 416
            R   REMQ+VFQ    +L+P   V  I+   L  +       +   I   L  V L   
Sbjct: 357 VRPLRREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKIGTEAEQEQAIIAALKEVGLDPE 416

Query: 417 LRHRRPGELSGGQKQRVNFARALAADPKLILCDEITSALDTVVAAAVIELLKELQRELGL 476
            R+R P E SGGQ+QR+  ARAL   P LIL DE TSALD  V   V+ELL+ LQ +  L
Sbjct: 417 TRNRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNL 476

Query: 477 SYIFISHDLSLVEAICDEIVVMYGGKKVEDITPAKI-NAPHHPYSQLLFSS 526
           +Y+FISHDL++V+A+  +++V+  G+ VE      I  AP HPY+Q L  +
Sbjct: 477 TYLFISHDLAVVKALSHQLMVVKHGQVVEQGDARSIFAAPQHPYTQQLLEA 527



 Score =  155 bits (391), Expect = 5e-42
 Identities = 97/247 (39%), Positives = 145/247 (58%), Gaps = 15/247 (6%)

Query: 299 RAVEDVSLKVEKGRNLGIIGESGCGKSTLARAIAGILPAAV-----GKIVFDGKELGRSA 353
           R VE VS  +++G  L ++GESG GKS  A +I  +LP  +     G I + G+ L    
Sbjct: 24  RVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLAHHPTGTIQYAGQNL-LGL 82

Query: 354 RERTRDQLREMQI--VFQYADTALNPAKSVEDILDRPLVFYHGMNARARSLRIDELLDMV 411
           +E+T   +R  +I  +FQ   T+LNP  S+E  ++  L  + G++ +  + R  ELL++V
Sbjct: 83  KEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHKGLSGKVATRRTLELLELV 142

Query: 412 RLPRNLRHRR----PGELSGGQKQRVNFARALAADPKLILCDEITSALDTVVAAAVIELL 467
            +P    H+R    P ELSGGQ+QRV  A ALA +P+L++ DE T+ALD  V   ++ELL
Sbjct: 143 GIPEP--HKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELL 200

Query: 468 KELQRELGLSYIFISHDLSLVEAICDEIVVMYGGKKVEDITPAKI-NAPHHPYSQLLFSS 526
           K+LQ  LG+S + ISHDL+LV  I   + VM  G  VE  +  ++  AP HPY++ L  +
Sbjct: 201 KQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCEELFRAPQHPYTRELLGA 260

Query: 527 VPKLDPS 533
            P   P+
Sbjct: 261 EPSGTPA 267