Pairwise Alignments

Query, 419 a.a., Reverse transcriptase, maturase from Sinorhizobium meliloti 1021

Subject, 552 a.a., putative reverse transcriptase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  130 bits (328), Expect = 8e-35
 Identities = 107/383 (27%), Positives = 167/383 (43%), Gaps = 51/383 (13%)

Query: 19  YEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTYFPPPVRAVSIPKKAGG 78
           Y    AVK     +G D   ++  +       +K    +    Y P P++ V+I K  G 
Sbjct: 61  YAKALAVKRVTSNSGSDTAGVDKVKWSTPNARFKAIGELKRRGYKPQPLKRVNIKKSNGK 120

Query: 79  ERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGVTRQRCW----- 133
            R LG+PT+ DR  Q +    +EP  ++    +SYG+R  +S  DA    R++C+     
Sbjct: 121 LRPLGIPTMKDRAMQALYLLALEPVSETTADSNSYGFRKERSTGDA----REQCFCVLAK 176

Query: 134 --KYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEKNGEVIERSR 191
               +W++E DI+G FD++ H+ LL  +  D       + + +WL      N E+     
Sbjct: 177 KASPEWIMEGDIQGCFDHISHEWLLNNIPMD------KVMLRKWLKCGFVFNKELFPTEE 230

Query: 192 GTPQGGVVSPILANLFL-----------HYAFDLWMTRT-HPDLPWCRYADDGLVHCQSE 239
           GTPQGG++SP LAN+ L           H  F    T T +P +   RYADD ++  +++
Sbjct: 231 GTPQGGIISPTLANMTLDGLQTMLAEKYHKKFVTRKTTTYYPKVHLVRYADDFIITGRNK 290

Query: 240 QQAEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANT 299
           +  E +K  +   L   GL +   KTKI +  D           FDFLGY  R  +    
Sbjct: 291 EALEEIKPLVVDFLKERGLTLSEEKTKITHIDD----------GFDFLGYNIRKYKGV-- 338

Query: 300 QWDEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYS 359
                        S  +LK     I+ + I          + + LNP++ GW+ YY    
Sbjct: 339 --------LLIKPSQKSLKKFMQKIRGI-IDSNKGSKQESLIRLLNPVITGWVNYYKNCV 389

Query: 360 RSALSTLADY-VNQKLRAWIRRK 381
            S     ADY + +KL  W  R+
Sbjct: 390 ASDTFRKADYLIFEKLWQWATRR 412